Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F21
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   1.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   4.4  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   7.7  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   7.7  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    25   7.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   7.7  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 355 ATRQVIIVENKMCEIISSTNISSLSKLVIFKILSFSNYLSIIVFLQV 215
           A++ +I V N  C+I++S  +  L  L   K++  S + + +  LQV
Sbjct: 266 ASQLIIAVTNTHCDIVTSFLLKKLQILEAPKVIDLSPFENALDVLQV 312


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 388 PYLRTCGYFGDATRQVIIVENKMCEIISSTNISSLSKLVIFKI 260
           PY+  CG   D    V I + K  E +SS  +S ++K +I ++
Sbjct: 297 PYINECGIKHDGIEGVAIHDQKEKE-LSSNLVSDVAKKIINEV 338


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 148 DCCAKT*LFSHINSLQKILK 89
           DC  +  LF++ NSLQKI+K
Sbjct: 103 DCPGQVELFTNHNSLQKIIK 122


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 310  ISSTNISSLSKLVIF-KILSFSNYLSIIVFLQV*KKLKTCNKLF 182
            ISST+    S+L IF   +SF+N  + I F      L  CN+LF
Sbjct: 1268 ISSTSFKVYSQLTIFANRVSFNN-STAIPFFSTKSVLWYCNRLF 1310


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 253 FSNYLSIIVFLQV*KKLKTCNKLFFKTSTLIITSTD 146
           F NYLS  V L        C+KL++KT  + +++ D
Sbjct: 516 FENYLSAPVILV----FFICHKLYYKTKRITLSNMD 547


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 120 ENNQVFAQQSVEVIISVLVLKNNLLHVFNFFYT*RNTIIL 239
           E  Q F +  + ++  V     N+LH+ +FF T  N  ++
Sbjct: 68  EKKQDFVKNEIAILKRVSYEHPNILHLVDFFETVNNLYLI 107


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 375 VRKYGIIKLNLLDSNIFLSLRKIVS 449
           VRKYG+  L  +D  +   +RKIVS
Sbjct: 45  VRKYGLNMLVSVDEEVKTYIRKIVS 69


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 255 DKILNITNFDKDEIFVDEIISHILFSTII 341
           D   N  N D DE  V+E +SH   S+II
Sbjct: 420 DSFGNAHNIDSDEDAVNESLSHSTKSSII 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,396
Number of Sequences: 5004
Number of extensions: 43964
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)