Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F21
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical...    30   1.0  
Z83229-1|CAB05738.1|  281|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z48543-4|CAE17720.1|  366|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U64860-2|AAB04992.3|  373|Caenorhabditis elegans Hypothetical pr...    28   4.0  
DQ015968-1|AAY81925.1|  366|Caenorhabditis elegans stargazin rel...    28   4.0  
Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   7.0  
AF039045-10|AAB94201.1|  393|Caenorhabditis elegans Hypothetical...    27   7.0  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    27   9.3  
AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL117202-25|CAE18009.1|  196|Caenorhabditis elegans Hypothetical
           protein Y47D3A.31 protein.
          Length = 196

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 142 CAKT*LFSHINSLQKILK*LCNKHRARQARPSKLYTNKVNN 20
           C  T + + + S+ K+L  +C +++A     SKL+TN + N
Sbjct: 83  CVDTRMEAEVESMDKVLA-ICERYKAFTQNESKLHTNTIAN 122


>Z83229-1|CAB05738.1|  281|Caenorhabditis elegans Hypothetical
           protein F54F11.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 376 TCGYFGDATRQVIIVENKMCEIISSTNISSLSKLVIFKILSFSN 245
           T  +FG  T    +VEN    I + T   S   LVI  +L  SN
Sbjct: 126 TIDFFGGDTNSTEVVENIQQTIQNITQTMSTGTLVILSLLDVSN 169


>Z48543-4|CAE17720.1|  366|Caenorhabditis elegans Hypothetical
           protein C18D1.4 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 308 DYFTHFVLYNNYLTCGITKIATSP*VWYYKIEPTRF*YFSQSTKN 442
           D  T F L  + + CG   + +S   W Y  E  R+  F   T N
Sbjct: 20  DRLTKFALICSAMACGCNTLCSSTNHWLYTSEVLRYFIFPNQTLN 64


>U64860-2|AAB04992.3|  373|Caenorhabditis elegans Hypothetical
           protein R106.2 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = -1

Query: 439 FRRLRKILESSRFNFIIP-YLRTCGY----FGDATRQVIIVENKMCEI-ISSTNISSLSK 278
           FR +R I     FN  +   L  CG     F  ++    I    MC++ IS   +S  + 
Sbjct: 46  FRDMRTISNIYIFNLAVADLLFLCGIPVSLFAQSSHDGWIWGPIMCKLYISGNAVSQFAS 105

Query: 277 LVIFKILSFSNYLSIIVFLQV*KKLKTCNKLF 182
            V   ILSF  YL++   +Q  K  +T    F
Sbjct: 106 AVFIAILSFDRYLAVCRPIQS-KSFRTTQAAF 136


>DQ015968-1|AAY81925.1|  366|Caenorhabditis elegans stargazin
           related protein STG-1 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 308 DYFTHFVLYNNYLTCGITKIATSP*VWYYKIEPTRF*YFSQSTKN 442
           D  T F L  + + CG   + +S   W Y  E  R+  F   T N
Sbjct: 20  DRLTKFALICSAMACGCNTLCSSTNHWLYTSEVLRYFIFPNQTLN 64


>Z92809-2|CAB07271.1|  628|Caenorhabditis elegans Hypothetical
           protein R17.2 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 430 LRKILESSRFNFIIPYLRTCGYFGDATRQVIIVENKMCEIISSTNISSLS 281
           L+++  S   NFI+P+L T  Y  +  ++V  V   +  I  S     +S
Sbjct: 366 LQEVDLSRHENFIVPFLNTISYSSEIAKKVGTVSEGVAIIFDSQRFQVIS 415


>Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical
           protein K04G2.6 protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 60  CLALCLLHNYLRIFCKLLI*ENNQVFAQQSVEVIISVLVLKNNL 191
           CL L   H Y R+ C LL  E+   FAQ+ V  +  VL+    L
Sbjct: 471 CLLLEPAHIY-RVICVLLERESKHNFAQEMVSTLHGVLLTATEL 513


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
 Frame = -1

Query: 487 ILMYHVK-ELSYFRETIFRRLRKILESSRFNFIIPYLRTCGYFGDATRQVIIVENKMCEI 311
           +L  H K  + Y+  ++   + +IL+SS+F FII +     +FG     ++ V       
Sbjct: 207 LLRIHKKIRIKYYSLSVRYEMEEILQSSKFTFIIRFTHLL-FFGFYVVVILFVRIMGESF 265

Query: 310 ISSTNISSLSKLVIFKILSFSNYLSIIVFLQV*KKLKTCNKLFFKTSTLIITST 149
            + T   S+++ V   + ++ N + +I+ ++  + L    +L    ST+ I ST
Sbjct: 266 FNGTLNYSVARGVFCTVPTY-NLIIVIIGIKSLRHL-NLQRLNKVQSTVQIKST 317


>AF039045-10|AAB94201.1|  393|Caenorhabditis elegans Hypothetical
           protein F15E11.4 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 93  RIFCKLLI*ENNQVFAQQ--SVEVIISVLVLKNNLLHVFNFF 212
           +IF  L+I   N+    Q  +VEVI   L+LKN+ L   +FF
Sbjct: 246 QIFGNLVISPENEHLVSQLKTVEVIFGGLILKNSNLSKIDFF 287


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 346 QVIIVENKMCEIISSTNISSLSKLVIFKILSFSNYLSIIVF 224
           + +++ N M +     ++   S +VIF ILS S ++ I+ F
Sbjct: 141 RALVIRNPMSQKFEKLSMPRASVVVIFGILSISLFMDILDF 181


>AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical
           protein M116.4 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 210 FYT*RNTIILK*FENDKILNITNFDKDEIFVDEIISHIL 326
           FY   +T  L+  ++ K ++ T +   ++ V + ISHIL
Sbjct: 76  FYLLTDTTFLRFIDSQKTIDTTQWINQKVNVSQFISHIL 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,007,401
Number of Sequences: 27780
Number of extensions: 233325
Number of successful extensions: 498
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)