Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F19
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 42 3e-05
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.35
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 27 1.1
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 1.9
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 2.5
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 3.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.3
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 4.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 24 7.6
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo... 24 10.0
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 24 10.0
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 24 10.0
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 10.0
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 42.3 bits (95), Expect = 3e-05
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 76 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDL 237
SGV VS C ++E+K K RYVVF + D K V + ++D+FL DL
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDL 57
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
+CRY ++DFE+ + +G +++I+ PD A +K KM+Y
Sbjct: 61 DCRYAIYDFEF-NLGEGV-------RNKIIFISWSPDVAPIKSKMVY 99
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.35
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 377 LGGVWHHDIRNNFVFSLASPSGCTL 303
L G WH D N+ SLASPS +L
Sbjct: 382 LSGSWHGDTENSVKQSLASPSEASL 406
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 318 RRSQGKHEIVPNVVVPDTAKVKKKML 395
R S KH I N+ V + +KVK K+L
Sbjct: 70 RESATKHSIFVNICVHEPSKVKNKLL 95
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 241 TGPAPENADMVSSILNTRISARVHPDGEAKEN 336
TG P N+ V + +NT ISA + EA N
Sbjct: 171 TGARPANSTSVPNAVNTEISAARATESEASRN 202
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 374 GGVWHHDIRNNFVFSLASPSGCTLALMRVFKIE 276
G +W D++N+ + + S S C + + V+K E
Sbjct: 528 GMLWEVDVQNHHIVTKKSVSNCPITYVMVYKNE 560
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 1.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 177 LFLVANVEHHVAVFLILFY--FFVCRFASVRYCHTRRHFLMLKHVKIAPL 34
+F++A + + +F+IL FF+ R+ V Y T R L V +PL
Sbjct: 1031 VFVLAVICYSSPMFMILIVPLFFLYRYNQVYYTQTSRELKRLDSVTRSPL 1080
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 2.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 82 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 204
VT D KT + +K KH+ V YIR K +D +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 3.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 240 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 61
+QV EK +V G F L H + +FL+ ++ CR SVR R L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 4.3
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -2
Query: 243 CLQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLIL---FYFFVCRFASVRYCHTRR 73
CL +F ++F ++ + F FL + + F IL F+FF+C + + +
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSLS 174
Query: 72 HFLMLKHVKIAPLIL 28
H L L + PL+L
Sbjct: 175 HLLSLA-ILFLPLLL 188
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 85 TVSDACKTTYEEIKKDKKHRYV 150
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 116 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNT 217
K+ + + N+A TFA SKP+ V+P++
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS 297
>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 69 FLMLKHVKIAPLILTTPRQQ 10
FL KHVK+A ++L RQ+
Sbjct: 139 FLEPKHVKLAGIVLLLDRQE 158
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 226 LEDLQTGPAPENADMVS 276
LE ++TG APE+ D+V+
Sbjct: 418 LEAIRTGNAPESGDLVT 434
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 103 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQTGPAPENADMVS 276
KTT + ++ Y+V R + ++E ++ E F +L+ E ADM S
Sbjct: 278 KTTLLAVHNSEERDYMVRQARHHQLQELENWSRKHDEDLEFSRELEYHTKSEQADMCS 335
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 88 VSDACKTTYEEIKKDKKHRYV 150
V D KT YE+++KD R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,723
Number of Sequences: 5004
Number of extensions: 32221
Number of successful extensions: 112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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