Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F19
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0479 + 34217170-34217172,34217337-34217786 55 2e-08
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 51 3e-07
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 48 3e-06
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 47 6e-06
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 42 2e-04
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 41 4e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 41 4e-04
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 39 0.002
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 37 0.005
05_01_0103 + 686770-687017,687120-687270 37 0.007
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 28 3.1
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 27 4.1
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737... 27 5.5
01_06_0584 - 30407012-30408531,30408625-30408955 27 5.5
04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527 27 7.2
04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378 27 7.2
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589... 27 7.2
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 26 9.5
07_01_0779 + 6020009-6020174,6022307-6022428,6022853-6022962,602... 26 9.5
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 26 9.5
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 54.8 bits (126), Expect = 2e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +1
Query: 76 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSFLEDLQT-GP 249
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +D L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGC 65
Query: 250 APENADMVSSILNTRISARVHPDGEAKENTKLFLMSW 360
D ++ + +A GEA +K+F +SW
Sbjct: 66 RYAVYDHDFTVSDATATAAAGEGGEA-PRSKIFFVSW 101
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 73 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSFLEDL 237
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G +D F++ L
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 48.0 bits (109), Expect = 3e-06
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 61 HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGGRNAEYDSFLEDL 237
H +SG+ V+ + T+ E++ K RYV+F I + +KQ+ VE G YD FL L
Sbjct: 7 HSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASL 66
Query: 238 QTGPAPENADMVSSILNTRISARVHPDGEAKENTKLFLMSWCQTPPRSRRR 390
PEN D ++ + GE + +K+F ++W + R R +
Sbjct: 67 -----PEN-DCRYALYDFDFVT-----GENVQKSKIFFIAWSPSTSRIRAK 106
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 46.8 bits (106), Expect = 6e-06
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 73 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSFLEDLQTG 246
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G R Y+ F L G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG 82
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 255 GECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
G+CR+ ++DF++ K I + PD AKV+ KMLY
Sbjct: 82 GDCRFAIYDFDFLTA-------EDVPKSRIFYILWSPDNAKVRSKMLY 122
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSF 225
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G YD F
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 ECRYGLFDFEYT--HQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
ECRY +FDF++ CQ K +I PDT++V+ KMLY
Sbjct: 83 ECRYAVFDFDFVTDENCQ---------KSKIFFISWAPDTSRVRSKMLY 122
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 82 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGGRNAEYDSFLEDL 237
+ V + K+ + E+K+ K HRYV+F I D + +I VE G YD F L
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASL 72
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 73 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSF 225
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G YD F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320
Score = 31.9 bits (69), Expect = 0.19
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 ECRYGLFDFEYT--HQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
ECRY +FDF++ CQ K +I PDT+KV+ KMLY
Sbjct: 328 ECRYAVFDFDFVTDENCQ---------KSKIFFISWSPDTSKVRSKMLY 367
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +1
Query: 79 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGGRNAEYDSFLEDLQTGPAP 255
G+ V+D CK ++E+K + R++VF I D+ +I VE +G Y+ F L PA
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATL---PAD 69
Query: 256 ENADMVSSILNTRISARVHPDGEAKENTKLFLMSWCQTPPRSRRR 390
E V + E + +K+F SW R+R +
Sbjct: 70 ECRYAVYDL--------DFVTDENCQKSKIFFFSWSPDTARTRSK 106
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 ECRYGLFDFEYT--HQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
ECRY ++D ++ CQ K +I PDTA+ + KMLY
Sbjct: 70 ECRYAVYDLDFVTDENCQ---------KSKIFFFSWSPDTARTRSKMLY 109
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 82 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGGRNAEYDSFLEDLQTGPAPE 258
+ V + K+ + E+ + K HRYV+F I D + +I VE G YD F L A
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL-PADAVY 98
Query: 259 NADMVS 276
+ D VS
Sbjct: 99 DLDFVS 104
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 82 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGGRNAEYDSFLEDL 237
+ V D CK + E+K + +R++++ I ++K+ + VE VG YD F L
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 53
Score = 29.9 bits (64), Expect = 0.77
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 258 ECRYGLFDFEYT--HQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
ECRY +FD+++ CQ K +I PDT++V+ KM+Y
Sbjct: 57 ECRYAIFDYDFVTEENCQ---------KSKIFFIAWSPDTSRVRSKMIY 96
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 265 DMVSSILNTRISARVHPDGEAKENTKLFLMSWCQTPPRSR 384
D +IL+T V P E + T L++ SW Q+ PR +
Sbjct: 86 DQGVNILDTAEMYPVPPRKETQGRTDLYIGSWMQSKPRDK 125
>10_08_0472 -
18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 243 CLQVFEKAIVFGITSADGFDVD 178
C ++FEK +V I+S DG+D +
Sbjct: 552 CGKLFEKVVVEAISSVDGYDTN 573
>01_06_1496 +
37772838-37772935,37773039-37773243,37773649-37773742,
37773830-37773933,37774370-37774618,37774706-37774819,
37775010-37775093,37775292-37775462,37775544-37775657,
37775751-37775894
Length = 458
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 143 ATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRQGRHRRMQIWSLRF*IHASVPGYIRTA 322
+T ++F+T + S S+ PN++ F++ GR R + + A++ +
Sbjct: 4 STSATSFSTPTKPASSSSSSSSPNSVCFARA--SGRCRMASVVVRAEAVDATISPTVSAL 61
Query: 323 KPRKT 337
+P KT
Sbjct: 62 RPSKT 66
>01_06_0584 - 30407012-30408531,30408625-30408955
Length = 616
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 348 EQFRVFLGFAVRMYPGTDACIQNRRDHICILRCR 247
++ R L F V+ + G +ACI+ R DH+ L R
Sbjct: 365 QKVRAALAFRVKEWVG-EACIEAREDHMLALALR 397
>04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527
Length = 281
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 125 KRIRNTATWCSTFATRNRSTSKPSADVM 208
+R+ WCS F T++R + + + DV+
Sbjct: 222 ERVIMLGLWCSAFETKHRPSMRQAMDVL 249
>04_01_0190 - 2234038-2234674,2237128-2237665,2239294-2239378
Length = 419
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 149 WCSTFATRNRSTSKPSADVM 208
WCS F T++R T + + DV+
Sbjct: 368 WCSAFETQHRPTMQKAMDVL 387
>01_03_0153 +
13255667-13255954,13258383-13258529,13258798-13258932,
13259344-13259461,13260925-13261049,13261407-13261532,
13261617-13261697,13262188-13262250,13262328-13262402,
13263439-13263517,13263627-13263727,13263952-13264065,
13264225-13264338,13264406-13264477,13264561-13264608
Length = 561
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 108 RFASVRYCHTRRHFLMLKHVKIAPLILTTPRQ 13
R A +R+C RR L L+ ++ P TPR+
Sbjct: 27 RPAELRFCGLRREALGLRSLRAPPRAAATPRK 58
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 321 AVRMYPGTDACIQNRRDHICILRCRPCLQVFEKAIVFGITSAD 193
A R+ G DAC+ RR H L+ E ++V+G D
Sbjct: 90 ARRLIAGADACLARRR-HAAAAGVHDALRFLEISLVYGDADND 131
>07_01_0779 +
6020009-6020174,6022307-6022428,6022853-6022962,
6024342-6024395,6026977-6027096,6027790-6029347
Length = 709
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 323 SPSGCTLALMRVFKIEETISAFSGAG-PVC 237
+P+G TL L+ V + + I F+GA PVC
Sbjct: 34 TPAGSTLVLLYVHRPDAMIPIFTGARVPVC 63
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 118 EIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQTGP 249
E+K KH + +I +E+ + +G D L+ L+ GP
Sbjct: 151 EVKPVLKHSVIAVFIANEENSLITGIGVDGLVKDGLLDKLKNGP 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,324,392
Number of Sequences: 37544
Number of extensions: 220335
Number of successful extensions: 713
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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