Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F19
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       51   4e-07
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    51   4e-07
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       37   0.006
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    37   0.006
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    37   0.006
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    31   0.23 
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl 4-hydrox...    29   1.6  
AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical...    29   1.6  
AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl 4-hydr...    29   1.6  
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   2.8  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     27   5.0  
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF077534-9|AAC26286.1|  194|Caenorhabditis elegans Hypothetical ...    27   6.5  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +1

Query: 70  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQ 240
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMK 58



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
           ECRY   D E T Q QG  G  +  K  ++     PD A V+++MLY
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNK--VIFVQYCPDNAPVRRRMLY 110


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +1

Query: 70  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQ 240
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VG +NA Y  F+E+++
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMK 58



 Score = 36.3 bits (80), Expect = 0.008
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
           ECRY   D E T Q QG  G  +  K  ++     PD A V+++MLY
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNK--VIFVQYCPDNAPVRRRMLY 110


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
           +CRY +FDF++T  C    G  +    +I+   + PD A +KKKM+Y
Sbjct: 79  DCRYAVFDFKFT--CSRV-GAGTSKMDKIIFLQICPDGASIKKKMVY 122



 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 189
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
           +CRY +FDF++T  C    G  +    +I+   + PD A +KKKM+Y
Sbjct: 79  DCRYAVFDFKFT--CSRV-GAGTSKMDKIIFLQICPDGASIKKKMVY 122



 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 189
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKVKKKMLY 398
           +CRY +FDF++T  C    G  +    +I+   + PD A +KKKM+Y
Sbjct: 79  DCRYAVFDFKFT--CSRV-GAGTSKMDKIIFLQICPDGASIKKKMVY 122



 Score = 31.5 bits (68), Expect = 0.23
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 70  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 189
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 160 IRDEKQIDVETVGGRNAEYDSFL-EDLQTGPAPENADMVSSILNTRISARVHPDG 321
           I DE+ I VE +  RN    S   ED  TG APE A+ ++   N  I     PDG
Sbjct: 684 IEDERWITVEVIRKRNLVKLSVNGEDPITGFAPEGAEQLNVYRNIFIGNNFTPDG 738


>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
            K02C4.3 protein.
          Length = 1307

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
 Frame = +1

Query: 94   DACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQTGPAPENADMV 273
            D  K   +  +++K+  Y  F +        E      + Y   LED+  G    N    
Sbjct: 826  DEFKEKLQRFRENKEFNYQQFSVDSPTVQSTEETPSSFSWYRDELEDIDIGDENANPTKN 885

Query: 274  SSILNTRI---SARVHPDGEAKENTKLFLMSWCQ 366
              +LN R+   S  + PD E  E  ++    W Q
Sbjct: 886  DYLLNARLDSYSVPIAPDVETSEMKRMVSQMWNQ 919


>Z81134-9|CAB03452.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 GGRNAEYDSFLEDLQTGPAPENADMVS 276
           G ++++Y+ F+ DL  GP P NA  VS
Sbjct: 522 GLKSSDYERFVGDLGYGPEPRNAPNVS 548


>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 316 DGEAKENTKLFLMSWCQTPPRSRR 387
           DG  KEN K F+ S    PP+ RR
Sbjct: 244 DGSTKENEKTFVQSTDPPPPKKRR 267


>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical
           protein ZK1251.9 protein.
          Length = 1701

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 316 DGEAKENTKLFLMSWCQTPPRSRR 387
           DG  KEN K F+ S    PP+ RR
Sbjct: 244 DGSTKENEKTFVQSTDPPPPKKRR 267


>U12762-1|AAA62207.1|  558|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 GGRNAEYDSFLEDLQTGPAPENADMVS 276
           G ++++Y+ F+ DL  GP P NA  VS
Sbjct: 521 GLKSSDYERFVGDLGYGPEPRNAPNVS 547


>AL031635-12|CAA21045.1|  559|Caenorhabditis elegans Hypothetical
           protein Y47D3B.10 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 GGRNAEYDSFLEDLQTGPAPENADMVS 276
           G ++++Y+ F+ DL  GP P NA  VS
Sbjct: 522 GLKSSDYERFVGDLGYGPEPRNAPNVS 548


>AJ270999-1|CAB71298.1|  559|Caenorhabditis elegans prolyl
           4-hydroxylase alpha subunit1 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 196 GGRNAEYDSFLEDLQTGPAPENADMVS 276
           G ++++Y+ F+ DL  GP P NA  VS
Sbjct: 522 GLKSSDYERFVGDLGYGPEPRNAPNVS 548


>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
           protein F42E11.1 protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 37  WCNFYVF*HQKMASGVTVSDACKTTYEEIKKD--KKHRYVVFYIRDEKQIDVETVGGRNA 210
           +C  Y      M +    S+AC  T  E +    +KH       +D K  D  TVGG   
Sbjct: 96  YCLLYFLLGVLMFTCTYFSNACLFTMAERRLYCIRKHLLQSVLRQDAKWFDENTVGGLTQ 155

Query: 211 EYDSFLEDLQTGPAPENADMVSSI 282
           +  S +E ++ G   +   +VS I
Sbjct: 156 KMSSGIEKIKDGIGDKIGVLVSGI 179


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 306 PGTDACIQNRRDHICILRCRPCLQVFEKAIVFG 208
           P   ACI   RDHIC+      +QV + ++  G
Sbjct: 233 PVNSACISPNRDHICLGGGEDAMQVTQTSVSAG 265


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 160 IRDEKQIDVETVGGRNAEYDSFLEDLQTGPAPENADMVSSILNTR 294
           +  + Q+D+E   GR  +    + D++TG   ++A + + +LN R
Sbjct: 42  LESQVQLDLEFCQGRARDMWKEMLDIETGGKKDSAKLANIVLNHR 86


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 226 LEDLQTGPAPENADMVSSILNTRISARVHPDGEAKENTKL 345
           +E +QT PAP N  +V+S L  ++   ++P+  A++ +K+
Sbjct: 269 IEKIQTTPAPLNVPVVASKLLRKL--EINPETIAEKTSKM 306


>AF077534-9|AAC26286.1|  194|Caenorhabditis elegans Hypothetical
           protein K07D4.2 protein.
          Length = 194

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 258 ECRYGLFDFEYTHQCQGTSGRRSQGKHEIVPNVVVPDTAKV 380
           +C YG++  E  H+   T+G  +  K ++ P   +  + ++
Sbjct: 154 KCNYGVYLLETIHRSIQTNGCETVKKEDVAPRAAIQQSPRL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,598,404
Number of Sequences: 27780
Number of extensions: 191161
Number of successful extensions: 785
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)