Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F18
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    30   1.7  
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    29   3.0  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    29   3.0  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    28   5.3  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   7.0  
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    27   9.2  

>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
            22709162-22709206,22709367-22709445,22709522-22709595,
            22709703-22709809,22711116-22711301,22711882-22711920,
            22712020-22712086,22712207-22712281,22713113-22713347,
            22713425-22713755,22714530-22714710,22714810-22714950,
            22715041-22715302,22715503-22715892,22717179-22717735,
            22718421-22718557,22718672-22718853,22718959-22719339,
            22719420-22719545,22719635-22719700,22720056-22721839,
            22721914-22722193,22722386-22722616,22723067-22723588,
            22723683-22723815,22723937-22724193
          Length = 2405

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +1

Query: 46   KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 201
            +LKS KLH +D+E   ++ PFVK   +      ++V+        L IKL L     N  
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798

Query: 202  LSEKSLLDLPFRAGAVKHVLLT 267
            L +  L+D+  RAG     L+T
Sbjct: 1799 LIKNVLMDIAQRAGNSNGHLVT 1820


>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 436 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 576
           V+  GDK   +ES    +T+ LPS  C D V   +     ST  L L
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPL 244


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 388 KCGGNLAHVVGFDESSVLMLGDKKRT-KESEALRATLELPSDSCIDFVQTVDGLVFSSTN 564
           + GG+LA++V      VL   D+    K  EAL+  +E   D  ++F+  V  L+F    
Sbjct: 767 RAGGDLANLV--HPGDVLHTTDELTDRKRREALQKAMEGKLDESLEFLAGVTALLFLGLE 824

Query: 565 YLKLDG 582
            L L+G
Sbjct: 825 GLALEG 830


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 65  YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSK*NLVCP 193
           YIS+T   T V  L  LD +H++ +K     LW   H   NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 485 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 378
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 222 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 91
           +++++ Q+ +  T   Y  C+  +D +  + V C+ +  DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,756
Number of Sequences: 37544
Number of extensions: 282718
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)