Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F18
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   8.3  

>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 524 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 405
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 524 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 405
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 427 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 540
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 272 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 150
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 61  KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 234
           K+  + +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,801
Number of Sequences: 27780
Number of extensions: 256183
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)