Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F17
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.7  
SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   6.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   6.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.7  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 397 DCNDNSSTYGILPITAGFFFRFRWSKDRQNVSHIKFNVANNYACPQAITIH 245
           DCN+  S      +++ F F+       Q  SH+ ++   NY  P AIT+H
Sbjct: 428 DCNEAYS------LSSKFHFKKEILIASQLSSHLDYSTFKNYLMPLAITLH 472


>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 482 FFCVPMYFLHSFHCSVHVA 426
           FFC  +YFLH+F     +A
Sbjct: 45  FFCPCIYFLHTFLADCEIA 63


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 377 NLWNTAHHSWILLPISLVKRQTECVPY 297
           NLW T+   W  +  S  +R   C+PY
Sbjct: 439 NLWQTSFAYWKCVADSGYQRIKACIPY 465


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -2

Query: 427  HLISWWTGSIDCNDNSSTYGILPITAGFFFRFRWSKDRQNVSHIKFNVANNYACPQAITI 248
            HLIS    SID    SS+  IL    G     R  ++ ++    KF V   +A   ++  
Sbjct: 796  HLISRLVSSIDAELGSSSGSILVFLPGVSNIARCIREIKSKDGSKFEVLPLHA---SLNT 852

Query: 247  HHKLSNSEIYMKRSMIC 197
              +    + Y KR +IC
Sbjct: 853  SEQRRCFKTYTKRKIIC 869


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 224  DLYEAKHDMYSIMLHLSSTTSKSVYDLS 141
            DL+  K++ Y I   +S  T   VYD+S
Sbjct: 1107 DLFIFKYESYDIPKDISKPTCDCVYDIS 1134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,925
Number of Sequences: 5004
Number of extensions: 42198
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)