Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F17
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0113 + 20248749-20248944,20249311-20250314                       29   2.2  
10_08_0464 - 18122609-18123148                                         28   3.9  
04_03_0273 - 13742351-13743357,13743617-13743731                       27   6.8  
05_03_0175 + 9222749-9222819,9223045-9223116,9223426-9223497,922...    27   8.9  

>11_06_0113 + 20248749-20248944,20249311-20250314
          Length = 399

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 328 WSKDRQNVSHIKFNVANNYACPQAITIHHKLSNSEIYMKRSMICIQSCF 182
           W K   +++HI F   +    P A  +  KL    +  KR M+    CF
Sbjct: 123 WGKPASSITHIVFATTSTGCLPSADVVLIKLLGLPLSTKRVMLYQAGCF 171


>10_08_0464 - 18122609-18123148
          Length = 179

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 291 NFIWDTFCLSFDQRNRKKNPAVMGSIP*VEELSLQSMDPVHHEIR 425
           +FIWDTF    D  +RK   AV  ++  ++ ++  S D +H   R
Sbjct: 7   SFIWDTFEQPGDGGDRKPVDAVTLTVEDIDGVAFTSGDGIHLSAR 51


>04_03_0273 - 13742351-13743357,13743617-13743731
          Length = 373

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -2

Query: 328 WSKDRQNVSHIKFNVANNYACPQAITIHHKLSNSEIYMKRSMICIQSCF 182
           W K   +++H+ F   +    P A     KL    +  KR M+    CF
Sbjct: 96  WGKPASSITHVVFATTSTGCLPSADVTLIKLLGLPLSTKRVMLYQSGCF 144


>05_03_0175 +
           9222749-9222819,9223045-9223116,9223426-9223497,
           9223609-9223680,9223765-9223836,9224408-9224482,
           9224587-9224658,9224912-9224977,9225051-9225095,
           9225220-9225724,9225807-9226005,9226080-9226238,
           9226316-9226434,9226556-9226766,9226905-9227136,
           9227219-9227369,9227458-9227781
          Length = 838

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
 Frame = -2

Query: 427 HLISWWTGSIDCNDNSST-------YGILPITAGFFFRFRWSKDRQNVSHI-KFNVANN 275
           H+++ ++ ++DC  NSST       Y   P   G    +  S+ R  VS++ KF++A+N
Sbjct: 244 HILTDYSFAVDCGSNSSTRGSDNTIYEAEPTNLGDASYYVTSQTRWGVSNVGKFSLASN 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,886,879
Number of Sequences: 37544
Number of extensions: 240756
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)