Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F17
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   4.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   10.0 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   10.0 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   10.0 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   10.0 

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 231 LLSLW*MVMAWGQA*LLATLNFIWDTFCL 317
           L++LW +  +  +  ++A LNFI   FCL
Sbjct: 262 LMTLW-LEPSSTERMIIANLNFILHLFCL 289


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 380 RVIITVNGSCPP*NKVRHGRC 442
           R II V   CPP +K    RC
Sbjct: 52  RYIIDVPPRCPPGSKFIKNRC 72


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 380 RVIITVNGSCPP*NKVRHGRC 442
           R II V   CPP +K    RC
Sbjct: 52  RYIIDVPPRCPPGSKFIKNRC 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 452  YVENTWGH 475
            YVENT+GH
Sbjct: 1347 YVENTFGH 1354


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 221 DLRITKFMVNGYGLG 265
           + R+TK++++GY  G
Sbjct: 6   EYRLTKYLLDGYDAG 20


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 SIDCNDNSST 374
           S+DCN NS T
Sbjct: 192 SLDCNTNSDT 201


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 396 TVMITLQLMEYC 361
           TV + + LMEYC
Sbjct: 315 TVFVFMALMEYC 326


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 SIDCNDNSST 374
           S+DCN NS T
Sbjct: 192 SLDCNTNSDT 201


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 SIDCNDNSST 374
           S+DCN NS T
Sbjct: 192 SLDCNTNSDT 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,666
Number of Sequences: 438
Number of extensions: 2864
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)