Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F15
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.3
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 27 1.7
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 26 2.9
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 26 2.9
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 26 3.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 5.1
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 8.9
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 8.9
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -1
Query: 342 LESYHRSRFSFLVSKKASHFCFC-----KAYLLYIYDLHFGIYHLWALNLLVSLVNHL 184
L Y+ + L SKK F K Y+L+ +H +Y WA L++ +NHL
Sbjct: 1413 LSKYNLAEIPLLDSKKVPIQIFFLQGENKNYVLFC--IHHVLYDAWAFQLIMDDINHL 1468
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 339 QEEKKD--LPSAPEGQGLVKPNGHGLFSQPRTPPKIKRPVPLSER 467
++E++D P +PEG+GL + H P + +RPV ++
Sbjct: 110 RKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDK 154
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 333 KIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTPPKIKRPVPLSER 467
K EEK + P PE Q + KP +P P++K P + +
Sbjct: 419 KHNEEKVETPK-PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASK 462
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 306 PEKKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQP 422
P KK E K E+KK+ P P+ + KP H L S P
Sbjct: 224 PAKKAEK--KKDEKKKNAPK-PQAEAPAKPPKHPLASAP 259
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 12 RSRDEIRPRDE-IRSRDEIKPKDELTSKDDNRSKDV 116
R D + +E +++++ +KP+DE T ++ NR ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEI 109
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISSRDL 11
V NTS + SS VNSS + SS L SS + SS L
Sbjct: 833 VVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTAL 870
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L SS + SS
Sbjct: 1373 VVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSS 1407
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L SS + SS
Sbjct: 2213 VVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSS 2247
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L SS + SS
Sbjct: 2501 VVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSS 2535
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L SS + SS
Sbjct: 2801 VVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSS 2835
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 118 NTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
NTS + SS VNSS + SS L SS + SS
Sbjct: 3427 NTSTPITSSTVVNSSTPITSSSVLNSSTAIASS 3459
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 3281 VVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSS 3315
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 485 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 519
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 893 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 927
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 1049 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 1083
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 1673 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 1707
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISSRDL 11
V NTS + SS VNSS + SS + SS + SS L
Sbjct: 1721 VVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTAL 1758
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 1829 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 1863
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 2021 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2055
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 2285 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2319
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 2597 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2631
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 2693 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2727
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 2921 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2955
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISS 20
V NTS + SS VNSS + SS L +S + SS
Sbjct: 3017 VVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 3051
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 8.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 297 FLKPEKKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTP-PKIKRP 449
+++ KKI + EE +D+PS E K H FS TP K+ RP
Sbjct: 75 YIEELKKIHGVHHV-EENRDVPSILENYRNSKRKSHN-FSSSNTPYLKLHRP 124
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 309 EKKIENDDKIQEEKKDLPSAPEG 377
E+K E +KIQ+ D P P G
Sbjct: 10 EEKEEESEKIQKSPVDTPHTPNG 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,148
Number of Sequences: 5004
Number of extensions: 29127
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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