Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F15
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 29 1.7
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 29 2.2
09_01_0037 - 604001-604957 28 5.1
06_03_0671 + 23348958-23349101,23349475-23349834,23350003-233503... 28 5.1
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 27 6.8
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 27 6.8
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 27 8.9
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 303 KPEKKIENDDKIQEEKKDLPSAPEGQGLVKPN 398
+P+ IE D+K E+ D+PS + G++KP+
Sbjct: 200 RPDGDIEIDEKFWEQDFDIPSCNQCGGVLKPD 231
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 15 SRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
+RD + +D R RD K +D S + R +D R R+E
Sbjct: 64 NRDRDKDKDRDRHRDRDKDRDRHRSSRERRDRDRDRDRDE 103
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
R RS E R RD R RDE + E + RS+D + +E+
Sbjct: 85 RHRSSRERRDRDRDRDRDEKDREKERDKDKERRSRDREKEKEK 127
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKD-ELTSKDDNRSKDVFRTRE 131
R RD R RDE + R++ + KD E S+D + K+ + RE
Sbjct: 93 RDRDRDRDRDE-KDREKERDKDKERRSRDREKEKEKEKERE 132
>09_01_0037 - 604001-604957
Length = 318
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 300 LKPEKKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQ-PRTPPKIKRP 449
L+P K+ +D P +P G L + H L SQ P +PP + P
Sbjct: 126 LRPLKRTTSDGHPTLSSAAAPGSPSGSDLSDSSHHSLPSQMPSSPPHLLLP 176
>06_03_0671 +
23348958-23349101,23349475-23349834,23350003-23350302,
23350399-23350488,23353290-23353766
Length = 456
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 21 DEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTRE 131
D + + R + + K KD +DDNRS+ VFRT++
Sbjct: 381 DSEKTTKQQRKKKKKKKKDG-QKEDDNRSQQVFRTKD 416
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 309 EKKIENDDKIQEEKKDLPSA----PEGQGLVKPNGHGLFSQPRTPP 434
E ++E DD + + +KD P+A G GL+ NG S+P P
Sbjct: 612 EHQLETDDALTDSRKDAPAALCTYGVGDGLLGRNGQS--SEPHIGP 655
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRD-EIKPKDELTSKDDNRSKDV 116
R S E P +R RD + +P + L KDD +S+D+
Sbjct: 500 RTSSGRERTPASRLRDRDADNRPSERLKQKDDLQSRDM 537
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 300 LKPEKKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTPPKIKRPVPLSE 464
+KP KK + EEKK +AP + N + +F QP K+ + S+
Sbjct: 194 VKPVKKKKEKPAKVEEKKTAVAAPAPPSEEELNPYSIFPQPEENLKVHTEIFFSD 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,165
Number of Sequences: 37544
Number of extensions: 179019
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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