Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F15
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.092
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr... 31 0.65
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 31 0.65
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 31 0.65
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 1.1
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 1.5
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 29 1.5
AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm rece... 29 2.0
Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.6
U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 29 2.6
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 4.6
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 27 6.0
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 27 6.0
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 8.0
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 8.0
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.092
Identities = 24/115 (20%), Positives = 45/115 (39%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREEXXXXXXXXXXXXXXXXXXX 191
R D+ + ++ +S+DE K KDE+ K ++ D + E+
Sbjct: 129 RKEDDKKEENKEKSKDEEKKKDEVKDKKEDEKMDDKKPGEKEEKKEEFKKEMKKEEKKEE 188
Query: 192 LPEKPRDSRPRDDKYQSEGXXXXXXXXXXXXXXXXFLKPEKKIENDDKIQEEKKD 356
E+P+ + + +++G + EKK E D ++EKKD
Sbjct: 189 KKEEPKKNDAPKKEGETKGEVKKDALVENPIVTEMSDRDEKKEEKKDDKKDEKKD 243
>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
C09G1.2 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 0.65
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 306 PEKKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRT 428
PE+ E D+ + E+++ P PE Q + P G G+ ++PR+
Sbjct: 1057 PEQPQEPDEPEESEEQE-PVRPEQQNIEIPEGGGVLTEPRS 1096
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 30.7 bits (66), Expect = 0.65
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKD-DNRSKDVFRTREEXXXXXXXXXXX-----XX 173
R RD R RD R++++ K++ ++ D + K+ R R+
Sbjct: 1091 RDRDRDRDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDRDRTEQKKSDREKEPSK 1150
Query: 174 XXXXXXLPEKPRDSR-PRDDKYQSEGXXXXXXXXXXXXXXXXFLKPEKKIENDDKIQEEK 350
EK +D R P K +S+G LK +I D ++EEK
Sbjct: 1151 KRKLEKKDEKEKDRREPERKKGKSDGKEYSKASTTSLIPTLS-LK-NFRIPKKDTVEEEK 1208
Query: 351 KDLPSAPEG 377
KD+ G
Sbjct: 1209 KDVKEEAPG 1217
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 30.7 bits (66), Expect = 0.65
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKD-DNRSKDVFRTREEXXXXXXXXXXX-----XX 173
R RD R RD R++++ K++ ++ D + K+ R R+
Sbjct: 1091 RDRDRDRDRDRDEDREKVRDKEDKAQREKDKKEKERERRRQRDRDRTEQKKSDREKEPSK 1150
Query: 174 XXXXXXLPEKPRDSR-PRDDKYQSEGXXXXXXXXXXXXXXXXFLKPEKKIENDDKIQEEK 350
EK +D R P K +S+G LK +I D ++EEK
Sbjct: 1151 KRKLEKKDEKEKDRREPERKKGKSDGKEYSKASTTSLIPTLS-LK-NFRIPKKDTVEEEK 1208
Query: 351 KDLPSAPEG 377
KD+ G
Sbjct: 1209 KDVKEEAPG 1217
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTR 128
+R RSRD R R RSRD + + S++ +R ++ R+R
Sbjct: 108 SRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSR 149
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTR 128
R RSR R RD R R + +D + RS++ RTR
Sbjct: 107 RSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTR 147
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/135 (20%), Positives = 43/135 (31%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREEXXXXXXXXXXXXXXXX 182
+R R RD R R RSRD + +KD +R + R R
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRERSRSRS 370
Query: 183 XXXLPEKPRDSRPRDDKYQSEGXXXXXXXXXXXXXXXXFLKPEKKIENDDKIQEEKKDLP 362
+K R +K + + EKK D +E ++ P
Sbjct: 371 KDRKRDKKRSRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKP 430
Query: 363 SAPEGQGLVKPNGHG 407
+ G+ + G+G
Sbjct: 431 TPTNGEVKNEEIGNG 445
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/135 (20%), Positives = 43/135 (31%)
Frame = +3
Query: 3 TRIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREEXXXXXXXXXXXXXXXX 182
+R R RD R R RSRD + +KD +R + R R
Sbjct: 311 SRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRERSRSRS 370
Query: 183 XXXLPEKPRDSRPRDDKYQSEGXXXXXXXXXXXXXXXXFLKPEKKIENDDKIQEEKKDLP 362
+K R +K + + EKK D +E ++ P
Sbjct: 371 KDRKRDKKRSRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKP 430
Query: 363 SAPEGQGLVKPNGHG 407
+ G+ + G+G
Sbjct: 431 TPTNGEVKNEEIGNG 445
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 12 RSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKD 113
+ DE + + +S+DE K KDE+ K ++ KD
Sbjct: 123 KKEDEKKEESKEKSKDEEKKKDEVKDKKEDEKKD 156
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 30 RPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
+ +DE + +DE+K K E KDD + + +EE
Sbjct: 135 KSKDEEKKKDEVKDKKEDEKKDDKKPGEKEEKKEE 169
>AF000298-6|AAC48262.1| 340|Caenorhabditis elegans Seven tm
receptor protein 122 protein.
Length = 340
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 342 LESYHRSRFSFLVSKKASHFCFCKAYLLYIYDL-HFGIYHLWALNLLVSLVNHLWMIYH 169
L + + F+ ++ ASHF F + +DL H + +W + ++ ++ LW + H
Sbjct: 90 LAALYACSFALCITLLASHFVFRYIAVCRPHDLHHLEGWKMWKIYVIPIIITILWYLVH 148
>Z81492-4|CAB04031.1| 624|Caenorhabditis elegans Hypothetical
protein E03H4.7 protein.
Length = 624
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 324 SRFSFLVSKKASHFCFCKAYLLYIYDLHFGIYHLWALN 211
S +FLVS K + +Y LY+ LH+ IY W LN
Sbjct: 282 SEGNFLVSNKLISYIGDISYALYL--LHWPIYSYWKLN 317
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 321 ENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTP-PKIKRPVPLSERQKFEYVT 488
E+DD +EE AP + LV P + TP P++KR LS+ E++T
Sbjct: 98 EDDDDYEEEGPRKRKAPSKKKLVYPRENYRREDSETPEPEMKRIRTLSDSSDDEWMT 154
>U70845-4|AAB09102.1| 340|Caenorhabditis elegans Hypothetical
protein F22H10.5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 312 KKIENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTPPKIKR 446
K ++K+ ++KK S+P L N HG S P+ P ++
Sbjct: 29 KSERKEEKLSKKKKSPSSSPRTPSLTSNNDHGRNSIPQEEPAFQQ 73
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 321 ENDDKIQEEKKDLPSAPEGQGLVKPNGHGLFSQPRTP-PKIKRPVPLSERQKFEYVT 488
E+DD +EE AP + LV P + TP P++KR LS+ E++T
Sbjct: 98 EDDDDYEEEGPRKRKAPSKKKLVYPRENYRREDSETPEPEMKRIRTLSDSSDDEWMT 154
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
protein F23D12.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 103 LLSSLEVNSSFGLISSLDLISSRGLISSRD 14
++S +E ++FGL S ++ S RG+I ++D
Sbjct: 542 IVSIIEKTAAFGLPSGIEFASERGVICTQD 571
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
R E R RD+ + R KP+D + S + +++ F EE
Sbjct: 180 RSERRNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEE 218
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 18 RDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
R E R RD+ + R KP+D + S + +++ F EE
Sbjct: 180 RSERRNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEE 218
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 372 EGQGLVKPNGHGL-FSQPR-TPPKIKRPVPLSERQKFEYVTV 491
+GQGL+K NG L F +P+ K++ P+ L +++F+ V +
Sbjct: 25 KGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDI 66
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSKDV 116
R RS+D R R RSRDE K TSK+ R DV
Sbjct: 482 RQRSKDRRRDRSRDRSRDERNEK-RRTSKNVVRQDDV 517
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 6 RIRSRDEIRPRDEIRSRDEIKPKDELTSKDDNRSK 110
R RSR R R RSRD + + +S+ +RS+
Sbjct: 205 RSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSR 239
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical
protein T05A12.4b protein.
Length = 975
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 12 RSRDEI-RPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
R +EI RP+D RSR +++ +DE+ + ++ + T++E
Sbjct: 864 REIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQDE 905
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
protein T05A12.4a protein.
Length = 1622
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 12 RSRDEI-RPRDEIRSRDEIKPKDELTSKDDNRSKDVFRTREE 134
R +EI RP+D RSR +++ +DE+ + ++ + T++E
Sbjct: 864 REIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQDE 905
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 124 VRNTSFDLLSSLEVNSSFGLISSLDLISSRGLISSRDLIL 5
++N + +L++ E ++ ISS LIS+R I+S IL
Sbjct: 47 IKNNRWHILAAFENGNNIEYISSASLISNRHFITSAFSIL 86
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 300 LKPEK-KIENDDKIQ---EEKKDLPSAPEGQGLVKPNGHGLFSQPRTPPKIKRPVPLSER 467
L P+K K +DDK + E+K+ P + + S P PP + P P E+
Sbjct: 774 LSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQ-KAAPIASNPPPPPPLPPPPPSVEK 832
Query: 468 QKFE 479
+K E
Sbjct: 833 KKLE 836
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 300 LKPEK-KIENDDKIQ---EEKKDLPSAPEGQGLVKPNGHGLFSQPRTPPKIKRPVPLSER 467
L P+K K +DDK + E+K+ P + + S P PP + P P E+
Sbjct: 774 LSPDKVKPNSDDKTKTSVRERKETDGEPSEDNNTQ-KAAPIASNPPPPPPLPPPPPSVEK 832
Query: 468 QKFE 479
+K E
Sbjct: 833 KKLE 836
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,847,410
Number of Sequences: 27780
Number of extensions: 162969
Number of successful extensions: 885
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -