Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F15
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        21   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   10.0 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   10.0 

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  RPRDEIRSRDEIKPKDELTSKDD 98
           RP D  R R+EI   DEL S DD
Sbjct: 281 RPSD--RQRNEILLSDELDSVDD 301


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 KKIENDDKIQEEKKDLPSAPEGQ 380
           K+++N+  +  +  D  +AP+GQ
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQ 83


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 66  KPKDELTSKDDNRS 107
           KPK+E   KDD+ S
Sbjct: 80  KPKEETDDKDDDES 93


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 45  SHREVLSHREILSSC 1
           S ++VLS  E+LSSC
Sbjct: 907 SSKKVLSPGELLSSC 921


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 265 IGLTETEMRGLF*NQKRKSRTM 330
           +GLT+T+++  F N++ K + M
Sbjct: 18  LGLTQTQVKIWFQNRRSKYKKM 39


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 30  RPRDEIRSRDEIKPKDE 80
           RPR EIRS D I    E
Sbjct: 523 RPRHEIRSTDVIPGTQE 539


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 204 VSLVNHLWMIYHHHEVLY 151
           +S+ NH   +YH   +LY
Sbjct: 105 MSIPNHYLWLYHDKTLLY 122


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 171 HHHEVLY 151
           HHH+VLY
Sbjct: 77  HHHQVLY 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,270
Number of Sequences: 438
Number of extensions: 1871
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)