Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F14
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0671 + 5036069-5037670                                           28   4.3  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           27   10.0 

>07_01_0671 + 5036069-5037670
          Length = 533

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 97  KSISFSSVFHKYYNYIFF 150
           KS+S+SSV+HK ++Y+ F
Sbjct: 223 KSLSYSSVYHKAWSYVNF 240


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 439 LHSTEIITIFIVGRC*KINCIAL 371
           L ++EI++ F++G C K+ C+ L
Sbjct: 523 LRASEILSSFVLGYCQKLQCVKL 545


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,616,207
Number of Sequences: 37544
Number of extensions: 159122
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)