Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F14
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.9  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    28   5.1  
Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical p...    27   9.0  

>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 234 FNLNTKNGYIIYFNKLLFN*IIGCLIFQCYAI 329
           FN N K  YI+YF ++L + +  C++F  + +
Sbjct: 47  FNDNIKFLYIVYFTQILISVLNNCVVFAHHVV 78


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
 Frame = +1

Query: 10  GCRNRPRQK-----SFILTGNEYIERV*SAFYVCKSISFSSVFHKYY---NYIFFVLKFK 165
           GC +R  Q      +F+LT N  I  +    +  +    S +  +YY   +++F V  F 
Sbjct: 550 GCEHREAQPGKQAITFLLTANLAIFFM--NLFESEKAGVSEMIIEYYGKRSWVFLVRSFS 607

Query: 166 PISVFHRYYDII 201
           P+++F+R++  +
Sbjct: 608 PLTIFYRFHSSV 619


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 310 YFSAMQLIF*KRPTINRVIISVLC 381
           Y   + ++F   PTI ++IISVLC
Sbjct: 84  YSDVLAIVFRHLPTIRQIIISVLC 107



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 YFSAMQLIF*QRPTINMVIISVLC 437
           Y   + ++F   PTI  +IISVLC
Sbjct: 84  YSDVLAIVFRHLPTIRQIIISVLC 107


>Z81531-10|CAE17807.1|  367|Caenorhabditis elegans Hypothetical
           protein F36D3.13 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 321 YAINFLETTYNK*GNYFSAMQLIF*QRPTINMVIISVLCN*FIGNYRQYIG*LKIYFRNE 500
           Y INF+++  N        +++IF    TIN  +  VLC      YR+ +   K  F   
Sbjct: 284 YIINFVQSKSNGIRFILRCIEVIFSFLITINNSLHCVLCYLMSTKYREAV---KSMFNKT 340

Query: 501 NTYD 512
           NT D
Sbjct: 341 NTVD 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,355,770
Number of Sequences: 27780
Number of extensions: 179234
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)