Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F14
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.3  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = +1

Query: 85  FYVCKSISFSSVF----HKYYNYIF 147
           F++C SI F+ +F     K Y Y F
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFF 479


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = +1

Query: 85  FYVCKSISFSSVF----HKYYNYIF 147
           F++C SI F+ +F     K Y Y F
Sbjct: 455 FFICPSIHFAQLFADRGMKVYYYFF 479


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 446 YWKLPTIHRVIKDLFQK 496
           Y+KL  IH   KDL Q+
Sbjct: 73  YYKLNKIHDAYKDLNQR 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +1

Query: 142  IFFVLKFKPISVFH 183
            ++F ++++PI+ FH
Sbjct: 1530 LYFTIQYRPINEFH 1543


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +1

Query: 142  IFFVLKFKPISVFH 183
            ++F ++++PI+ FH
Sbjct: 1526 LYFTIQYRPINEFH 1539


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 88  YVCKSISFSSVFHKYYNYIF 147
           +VCK I+ +S  ++   Y+F
Sbjct: 26  FVCKDITSTSALYRLKLYLF 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,616
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)