Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F13
         (613 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-7|CAD27479.1|   86|Anopheles gambiae hypothetical prote...    24   3.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   4.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   5.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   7.8  

>AJ438610-7|CAD27479.1|   86|Anopheles gambiae hypothetical protein
           protein.
          Length = 86

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 300 KNQRKRKSAMKVKRQL 347
           K Q +RK AMKVKR+L
Sbjct: 42  KPQEQRKLAMKVKRRL 57


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
 Frame = +2

Query: 251  TIEMDQSDINLKYSDDEEPKKE-----------KVGDESKKTTEEGNQ-KVPQSSVELVT 394
            T+E+  S+ N++ S D+    E           K  DE  +  EE N+ +     ++L  
Sbjct: 920  TVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAI 979

Query: 395  EDAMELNIDTVASKPVAMDVVDAPLSVPEIVIEKV-STVESKAKEITDKI 541
            E A E    ++  + VA+   +A   +  +  E++  T+E+K +E  D +
Sbjct: 980  EKAHE-GSSSIKKEIVALQKREAEGKMKRLEFEQILQTIETKLQETKDTL 1028


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 293  DDEEPKKEKVGDESKKTTEEGNQ 361
            DD+E  ++   D+   TT EGN+
Sbjct: 1826 DDDEDDEDDDDDDDDTTTGEGNE 1848


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 480  SGTLNGASTTSIATGLDATVSMFNSIASSVTSSTD 376
            SGT   AST+  A    +  +   S+A  VTS TD
Sbjct: 1301 SGTECSASTSEPAPAAPSNSTPSRSVARIVTSFTD 1335


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,963
Number of Sequences: 2352
Number of extensions: 6601
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)