Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F11
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    30   0.23 
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   1.2  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    27   1.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   4.9  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   6.4  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 3   TRFPLFTAVFRICRGELKPNDFIDCI 80
           + FPLFTAV+RI    L PN  ++ I
Sbjct: 348 SEFPLFTAVYRIVYEGLPPNKLLEAI 373


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 399 LLGSYKSLVPRHP*SLWRNLSQVINVIIFIIYTLYVL 509
           +LG +   +P    S W N+  V+   +FI+Y L +L
Sbjct: 139 VLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLL 175


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 9   FPLFTAVFRICRGELKPNDFI 71
           FPLFTAV+ I   ++ P D I
Sbjct: 346 FPLFTAVYNISYEDMDPKDLI 366


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 479  NFYYLYIICVIVGYCVLITEHEVSVVTK 562
            NF+  Y+ C ++G  V   E+ +S+V +
Sbjct: 935  NFFLYYVECQVIGDIVTDLEYSISLVRR 962


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 429 RHP*SLWRNLSQVINVIIFIIYTL 500
           ++P   W ++SQVI V+  +IYTL
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTL 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,421
Number of Sequences: 5004
Number of extensions: 46053
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)