Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F11
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    45   7e-07
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 44.8 bits (101), Expect = 7e-07
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 6   RFPLFTAVFRICRGELKPNDFIDCIRSHPEHM 101
           RFPLFT V RIC GE  P + I+ +R+HPE++
Sbjct: 319 RFPLFTTVHRICIGETMPMELIENLRNHPEYI 350


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 149  HSVYHHEIIIYCQPHQTHLSL 211
            H    H++I++  PH   ++L
Sbjct: 1354 HDTVTHQLIVHAPPHSPQITL 1374


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 33  RICRGELKPNDFIDCIRSHPE 95
           ++C G  K ND +  +R H E
Sbjct: 240 QVCSGNCKLNDILLTVRPHLE 260


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 243 FTVKCMKLNSENNITKFDL 299
           FT  CMKL  ++  T+FD+
Sbjct: 212 FTELCMKLGWKSARTRFDI 230


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 33  RICRGELKPNDFIDCIRSHPE 95
           ++C G  K ND +  +R H E
Sbjct: 240 QVCSGNCKLNDILLTVRPHLE 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 158  YHHEIIIYCQPHQTHL 205
            YHH +  +C  H+T +
Sbjct: 1679 YHHNVNKHCTIHRTQV 1694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,942
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)