Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F10
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    32   0.048
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          28   1.0  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   7.3  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   7.3  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.6  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +1

Query: 301 RSLLALFLAVAGFSGRLFASHFTHSPTLLVDTCHSLCRLVGLITTLLSYKYERADEGAGR 480
           R +L L + V  F   +   +   S  L+ D+ H L  +V L+  L +    R       
Sbjct: 9   RIILLLGIDVTFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWA---TRLAHSTSH 65

Query: 481 EGRLRNTFGWARIEVVGRLS 540
           E +   T+GW R E++G LS
Sbjct: 66  EPKY--TYGWQRAEILGALS 83


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 443 ESSVVMRPTSLHNEWQVSTKSVGECVK*DANKRPLNPATAKNSASKDL 300
           +SS     TSL  E ++ T  VG+ +K  + K+  NP  A  + SK +
Sbjct: 120 QSSQTPNITSLREEKELPTGRVGQKLKLTSQKQRFNPMAASFNYSKSV 167


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 220 NVLSL*SPFIEVAAMAMKEWLQWLPPPRSLLALFLAVAGFSGRL-FASHFTHSPTLLVDT 396
           N LS+    + + A   K +LQ     +  +A ++++  ++    +   +  S   L+D 
Sbjct: 7   NTLSVYHNLLILEASFRKTYLQLQVRRQKYMAFYVSLLVWNFYFGYRVFYRISKYSLIDL 66

Query: 397 CHSLCRLVGLITTLLSY 447
            + LC L G++T LL Y
Sbjct: 67  TYKLCLLCGIVTLLLFY 83


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 335 PATAKNSASKDLGGGSHCNHSFMAI 261
           PA+ ++S S+D G   +C+H   ++
Sbjct: 237 PASNQSSVSEDFGAAPNCDHKHNSV 261


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 275 NGYNGYRHRDPCWH 316
           N ++ YRH+ P WH
Sbjct: 323 NNWSYYRHQPPAWH 336


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 320 NSASKDLGGGSHCNHSFMAIAATSIKGDYRLNTFCVS 210
           N +S +L   + CN +F  I  +    D   +T CVS
Sbjct: 160 NCSSVNLHNATKCNFTFPTIQGSIHLSDINDSTICVS 196


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = -1

Query: 359 DANKR--PLNPATAKNSASK-DLGGGSHCNHSFM 267
           +AN+R   LNP++  ++ SK DLGG S   H++M
Sbjct: 8   EANRRFKDLNPSSLYDNLSKPDLGGSSEL-HTYM 40


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 375 TNTFGRHLPFIMQASRSHNYTTFI 446
           T  FG   P +++ ++SH+ TTF+
Sbjct: 205 TCRFGLPSPVVLEHAKSHSITTFL 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,593
Number of Sequences: 5004
Number of extensions: 47677
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)