Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F10
         (545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC121016-1|AAI21017.1|  507|Homo sapiens solute carrier family 3...    37   0.040
BC121015-1|AAI21016.1|  507|Homo sapiens solute carrier family 3...    37   0.040
AF323590-1|AAG53405.1|  507|Homo sapiens zinc transporter 1 prot...    37   0.040
AY212919-1|AAP44332.1|  496|Homo sapiens zinc transporter 8 prot...    33   0.49 

>BC121016-1|AAI21017.1|  507|Homo sapiens solute carrier family 30
           (zinc transporter), member 1 protein.
          Length = 507

 Score = 37.1 bits (82), Expect = 0.040
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 358 SHFTHSPTLLVDTCHSLCRLVGLITTLLSYKYERADEGAGREGRLRNTFGWARIEVVGRL 537
           S  T S  +L D+ H L  ++ L+  L++ ++ R      +     NTFGW R EV+G L
Sbjct: 29  SRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQK-----NTFGWIRAEVMGAL 83


>BC121015-1|AAI21016.1|  507|Homo sapiens solute carrier family 30
           (zinc transporter), member 1 protein.
          Length = 507

 Score = 37.1 bits (82), Expect = 0.040
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 358 SHFTHSPTLLVDTCHSLCRLVGLITTLLSYKYERADEGAGREGRLRNTFGWARIEVVGRL 537
           S  T S  +L D+ H L  ++ L+  L++ ++ R      +     NTFGW R EV+G L
Sbjct: 29  SRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQK-----NTFGWIRAEVMGAL 83


>AF323590-1|AAG53405.1|  507|Homo sapiens zinc transporter 1
           protein.
          Length = 507

 Score = 37.1 bits (82), Expect = 0.040
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 358 SHFTHSPTLLVDTCHSLCRLVGLITTLLSYKYERADEGAGREGRLRNTFGWARIEVVGRL 537
           S  T S  +L D+ H L  ++ L+  L++ ++ R      +     NTFGW R EV+G L
Sbjct: 29  SRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQK-----NTFGWIRAEVMGAL 83


>AY212919-1|AAP44332.1|  496|Homo sapiens zinc transporter 8
           protein.
          Length = 496

 Score = 33.5 bits (73), Expect = 0.49
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 301 RSLLALFLAVAGFSGRLFASHFTHSPTLLVDTCHSLCRLVGLITTLLS-YKYERADEGAG 477
           R L  L L VA F   L + +  +S  LL D+ +    L+ L   L + Y   R   G  
Sbjct: 10  RLLFMLVLTVAFFVAELVSGYLGNSIALLSDSFNMFSDLISLCVGLSAGYIARRPTRGFS 69

Query: 478 REGRLRNTFGWARIEVVGRLS 540
                  T+G+AR EVVG LS
Sbjct: 70  A------TYGYARAEVVGALS 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,785,707
Number of Sequences: 237096
Number of extensions: 1691556
Number of successful extensions: 3090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3090
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)