Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F10
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81534-2|CAB04344.2|  226|Caenorhabditis elegans Hypothetical
           protein F37H8.3 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 274 EWLQWLPPPRSLLALFLAVAGFSGRLFASHFTH 372
           E+ QWL P RSL    L V    G LF  +  H
Sbjct: 50  EFSQWLGPDRSLFLGTLTVDDLEGGLFLQYLKH 82


>AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4c protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 347 RPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDYRLNTF 219
           +P   A+ ++S+     GG   N S   I+ATS KG+  ++TF
Sbjct: 330 QPTRTASVRSSSLSSYVGGGKRNSSASVISATSEKGE-NVDTF 371


>AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4b protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 347 RPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDYRLNTF 219
           +P   A+ ++S+     GG   N S   I+ATS KG+  ++TF
Sbjct: 460 QPTRTASVRSSSLSSYVGGGKRNSSASVISATSEKGE-NVDTF 501


>AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4a protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 347 RPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDYRLNTF 219
           +P   A+ ++S+     GG   N S   I+ATS KG+  ++TF
Sbjct: 453 QPTRTASVRSSSLSSYVGGGKRNSSASVISATSEKGE-NVDTF 494


>AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4d protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 347 RPLNPATAKNSASKDLGGGSHCNHSFMAIAATSIKGDYRLNTF 219
           +P   A+ ++S+     GG   N S   I+ATS KG+  ++TF
Sbjct: 360 QPTRTASVRSSSLSSYVGGGKRNSSASVISATSEKGE-NVDTF 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,190,934
Number of Sequences: 27780
Number of extensions: 273812
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)