Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F09
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    32   0.057
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   3.8  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   5.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.7  

>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 31.9 bits (69), Expect = 0.057
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 403 YLSLSCFKPFKFYITISNVTSNYVCSITNQIPS 501
           Y+S+SC + F   +  S +++ YVC+I  QI S
Sbjct: 365 YVSISCGRLFAVALLFSGMSAGYVCTIAGQIVS 397


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 139 YGIVGEAVGIRS*YVPRARRRLPVSCRCVLGSLPSVIGT----AMCRPS 273
           Y I+ + +GI   Y+ R R  + +    +L S+P +IG     A C P+
Sbjct: 312 YSIIDDTLGITYQYMARERLHMRLRIAHLLISIPLIIGVHVAIAWCDPA 360


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -1

Query: 204 ETTP---STRYISRADSNGFSNDTIPLIIAPIHRPMQK 100
           ET P   S RY+  ADSN  S D        +H P+ +
Sbjct: 494 ETRPKGESARYLEHADSNSDSEDLSSSANNDVHEPVAR 531


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 172  SGFQRLLQRYHTAYYSTYTPTDAKMCDNRQCLS 74
            +G+  LL  +   Y+ST+    A  C N Q  S
Sbjct: 1336 TGYAWLLYMFFQMYFSTFGQAVASACPNAQTAS 1368


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 223  HSGN*QGDDAEHAVHITSGF 164
            H+GN   DD  H +HI  GF
Sbjct: 1733 HNGNIMIDDQGHILHIDFGF 1752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,863
Number of Sequences: 5004
Number of extensions: 42584
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)