Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F09
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0307 + 2304500-2306023                                           28   3.8  
01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903           28   3.8  
05_04_0205 + 19027748-19027844,19028166-19028548                       28   5.0  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    27   6.6  
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    27   6.6  
06_03_1376 - 29687417-29687536,29687622-29687688,29688448-296885...    27   8.8  

>11_01_0307 + 2304500-2306023
          Length = 507

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -1

Query: 339 EYVPFEAPFVFKPCNRCCGGETA--GAAHRGAN 247
           E +PFEA    + C + C G  +  GA H GA+
Sbjct: 369 ERLPFEANATAEQCEQACAGNCSCWGAVHSGAS 401


>01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903
          Length = 153

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 ICTACSASSPC*LPLCTWLSTICYWHRDVPPQRFHHH 287
           +C A    SPC LP C +  +  Y ++  P   F +H
Sbjct: 107 VCAASCHHSPCSLPDCYFYKSYSYSYKPSPSFGFGYH 143


>05_04_0205 + 19027748-19027844,19028166-19028548
          Length = 159

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 113 RCIGAIISGMVSLEKPLES 169
           RC+GA++SG   L+ P ES
Sbjct: 17  RCVGALLSGSAKLQPPRES 35


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 144  TIPLIIAPIHRPMQKCAITGSACPVAVYLRGTKCLKYNMAVTHTRPSC 1
            T PL  AP+  P +  A T  +CPVAV +  TK    N   +    +C
Sbjct: 3200 TAPLSPAPL--PGESHACTDVSCPVAVEVSETKLESANHTASQLGAAC 3245


>03_05_0704 - 26953474-26953643,26953770-26953801,26953915-26954009,
            26954107-26954180,26954283-26954412,26954522-26954585,
            26954660-26954722,26954795-26954937,26955386-26955523,
            26955610-26955731,26955805-26955976,26956559-26956630,
            26956753-26956887,26956987-26957103,26957184-26957316,
            26957455-26957561,26958060-26958077,26958235-26958379,
            26958472-26958671,26960744-26961421
          Length = 935

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = -1

Query: 201  TTPSTRYISRADSNGFSNDTIPLIIAPIHRPMQKCAITGSACPVAVYLR-GTKCLKYNMA 25
            T+  T Y    D NGF  DT+  +   +     +C    S  P A Y   G    +Y M 
Sbjct: 839  TSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYME 898

Query: 24   VTHT 13
              H+
Sbjct: 899  DEHS 902


>06_03_1376 -
           29687417-29687536,29687622-29687688,29688448-29688504,
           29689365-29689435,29690326-29690385,29690470-29690601,
           29690828-29690986
          Length = 221

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 310 IQTLQQVLWW*NRWGGTSRCQ*QMVES 230
           +Q LQQ LW  +RW G +R   Q+V++
Sbjct: 14  LQQLQQQLWQAHRWVGPARSISQLVKT 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,817
Number of Sequences: 37544
Number of extensions: 307229
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)