Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F08
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 29 0.36
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha... 28 0.48
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 27 1.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 1.5
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 2.6
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 5.9
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 25 5.9
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 5.9
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 7.8
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 24 7.8
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 24 7.8
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.36
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 365 NVFSIWIIVFNKFSWNFAASS 303
N+ SIW++V + F W F+A+S
Sbjct: 14 NISSIWLLVVSFFEWLFSATS 34
>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 28.3 bits (60), Expect = 0.48
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 249 TAHRNTFHPKFSKKVLSRDCPVVLPPQGPP 160
TAH KF K V++ D P + P +G P
Sbjct: 122 TAHLKHIFEKFGKNVITGDNPSIAPGRGKP 151
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 120 PFFERININVKIKLH*ERYKVMFILKCE 37
PFF + I+ I L RYK IL+C+
Sbjct: 87 PFFLLVYIDAPIMLRFNRYKTYVILQCQ 114
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 129 FWLPFFERININVKIKL 79
FWLP+F + +NV I L
Sbjct: 94 FWLPYFRSLGVNVPIVL 110
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 113 KNGNQNQKTVYKLVLTGGPCGGKTTGQSRLSTFFEN 220
+N ++ K +YK++L G GK+T ++ +N
Sbjct: 25 ENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKN 60
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 277 GVKFADLTPDEAAKFQENLLK 339
G+K A +TPDEA + NL K
Sbjct: 80 GIKCATITPDEARVKEYNLKK 100
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 4 ACVALMALYILFTF*YKHYXXXXXXXXXXXXYIYAFKKWQPKPEN 138
A L A I+F F H Y+ K W P+PEN
Sbjct: 438 AACNLCAACIIFLF--AHETKGLTLEEINELYLSGAKPWMPRPEN 480
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 5.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 404 IRQFLGLVMPSSKNVFSIWIIVFNKFS 324
I+ FL ++ P SKN+ +W+ ++ F+
Sbjct: 486 IKGFLVVLDPISKNICYLWLFLYCPFT 512
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.2 bits (50), Expect = 7.8
Identities = 20/91 (21%), Positives = 38/91 (41%)
Frame = -2
Query: 312 RFIWCQICKFHTTTEEDGSRFTAHRNTFHPKFSKKVLSRDCPVVLPPQGPPVRTNL*TVF 133
+ + C + F T + E + + + KF K S + P + P + + T+
Sbjct: 189 KILVCILPSFFTRSSESVENASNLISDYLKKFGKPRQSIELPDIAVDACPSNASRIQTLS 248
Query: 132 WFWLPFFERININVKIKLH*ERYKVMFILKC 40
WL E+ ++NV + K++ IL C
Sbjct: 249 AAWLLLNEKSDLNVDL------CKILIILTC 273
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 292 DLTPDEAAKFQENLLKTMIQIEN 360
D TP+ +EN L T + IEN
Sbjct: 276 DFTPETVQPLEENELDTELNIEN 298
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 307 EAAKFQ---ENLLKTMIQIENTFFELGM 381
E +FQ NL+ T +++ NT ELG+
Sbjct: 318 EVVQFQMSIANLINTQVEVTNTIEELGL 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,252
Number of Sequences: 5004
Number of extensions: 35741
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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