Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F08
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 30 0.80
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 1.1
01_07_0240 - 42227132-42227245,42227332-42227394,42227484-422275... 28 3.2
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 27 4.3
07_03_1024 - 23360347-23360426,23362575-23362733,23362826-233629... 27 5.6
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 26 9.9
10_01_0043 + 570340-571683 26 9.9
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 26 9.9
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 29.9 bits (64), Expect = 0.80
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 178 QNHRTVSTKHLLRKLRMEGVPVCRETATVLLSGGVKFADLTPDEAAKFQENLLKTMIQIE 357
Q RT + K L + G + T ++L G K +LT DEA + +NL T +Q+E
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK-NNLT-DEALRMFQNLCLTDLQLE 653
Query: 358 NTFFEL 375
F +
Sbjct: 654 TRTFNI 659
>10_08_0495 - 18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 187 RTVSTKHLLRKLRMEGVPVCRETATVLLSGGVKFADLTPDEAAKFQENLLKTMIQIENTF 366
RT + K L + G + T ++L G K +LT DEA + +NL T +Q+E
Sbjct: 1478 RTAAAKELYVSITKSGTQLELSTYNIILHGLCK-NNLT-DEALRMFQNLCLTDLQLETRT 1535
Query: 367 FELGMTSPRNC 399
F + + + C
Sbjct: 1536 FNIMIGALLKC 1546
>01_07_0240 -
42227132-42227245,42227332-42227394,42227484-42227552,
42227716-42227798,42228056-42228176,42228335-42228372,
42228932-42228990,42229076-42229149,42229241-42229753
Length = 377
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 104 MRSKNGNQNQKTVYK----LVLTGGPCGGKTTGQSRLSTFFENLGWKVFRCA 247
+ SK GN + ++ +++ G GGKTT +L+ F+N G KV A
Sbjct: 182 LTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAA 233
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 124 PKPENGLQVGPNRRT-LRRQNHRTVSTKHLLRKLRMEGVPV 243
P N ++GP T L+R+ R ++ L KLR GVP+
Sbjct: 66 PNTRNEGRMGPTGNTGLKRRKGRGLTINGTLAKLRARGVPL 106
>07_03_1024 -
23360347-23360426,23362575-23362733,23362826-23362937,
23362963-23363307
Length = 231
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 106 AFKKWQPKPENGLQVGPNRRTLRRQNHRTVSTKHLLRKLRMEGVP--VCRETATVLLSG 276
A ++W + + L +G R LRR + S + L R R GV V ++A V+L G
Sbjct: 62 AMRRWWWRADPQLHLGRARLLLRRWRAGSASARRLARWRREGGVTPRVLLQSAEVVLRG 120
>12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 112 KKWQPKPENGLQVGPNRRTLRRQNHRTV 195
+K+ P+ E+GL GP RRT RR+ R +
Sbjct: 1045 EKFIPR-EDGLLRGPQRRTTRRKVERKI 1071
>10_01_0043 + 570340-571683
Length = 447
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 207 VLSRDCPVVLPPQGPPVRT 151
V+S+ PVV+ P PPV+T
Sbjct: 4 VVSKSAPVVVRPSQPPVKT 22
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 107 RSKNGNQNQKTVYKLVLTGGPCGGKTTGQSRLST 208
+S GNQ+++ V + +T GP G+ +GQ + ++
Sbjct: 244 KSDEGNQSKEHVQSIQVTSGPMSGE-SGQGKATS 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,822
Number of Sequences: 37544
Number of extensions: 241665
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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