Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F08
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.75 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 35  YSHFNINITLYLS*CNLILTFIFMRSKNGNQNQKTVYKLVL 157
           Y+ FN+ I  Y S   +   F+F+   N NQ+  + +K ++
Sbjct: 294 YTEFNLTIKYYKSGSTVPFNFMFIADLN-NQSTASDFKQLI 333


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 371 SKNVFSIWIIVFNKFSWNF 315
           S+ VF +  I+FN   W+F
Sbjct: 448 SRIVFPVAFIIFNILYWSF 466


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 132 WFWLPFFER 106
           W W PF ER
Sbjct: 72  WLWTPFIER 80


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 128  NQKTVYKLVLTGGPCGGKTTG 190
            N KT++ L +   P G KTTG
Sbjct: 1249 NIKTLHGLKVIPTPAGLKTTG 1269


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 6   LCGSNGSLYFIHILI*TLLCTFPSVI*F*RLYLCV 110
           +C SNG +Y  H  +    C   S +   RL  C+
Sbjct: 117 VCASNGKIYANHCELHRAACHSGSSLTKSRLMRCL 151


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 161 GGPCGGKTTGQSRLST 208
           GGP  G TTG + + T
Sbjct: 411 GGPPTGATTGPNEIVT 426


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 161 GGPCGGKTTGQSRLST 208
           GGP  G TTG + + T
Sbjct: 397 GGPPTGATTGPNEIVT 412


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 161 GGPCGGKTTGQSRLST 208
           GGP  G TTG + + T
Sbjct: 431 GGPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 161 GGPCGGKTTGQSRLST 208
           GGP  G TTG + + T
Sbjct: 380 GGPPTGATTGPNEIVT 395


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 350 WIIVFNKFSWNF 315
           W+ VFN   W F
Sbjct: 171 WLSVFNGTGWTF 182


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 257 AVSRHTGTPSILS 219
           A S HT TP+ LS
Sbjct: 284 AESEHTSTPNFLS 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,045
Number of Sequences: 438
Number of extensions: 2481
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)