Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F07
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     28   4.0  
02_05_1333 - 35761405-35761822,35762551-35763155                       28   4.0  

>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 213 PPPARTPCVTQCNIFLYPHPSP 148
           PPP + P   +C +  YP+P P
Sbjct: 151 PPPEKPPPKPECKLVPYPYPVP 172


>02_05_1333 - 35761405-35761822,35762551-35763155
          Length = 340

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 213 PPPARTPCVTQCNIFLYPHPSP 148
           PP A TP    C+ F  P PSP
Sbjct: 56  PPMAMTPLHHTCSFFFRPQPSP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,427,556
Number of Sequences: 37544
Number of extensions: 212802
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)