Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F06
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 290 8e-80
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 177 5e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 172 2e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 78 8e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 8e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 9e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 3e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.066
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 3.3
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.6
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 290 bits (711), Expect = 8e-80
Identities = 138/154 (89%), Positives = 145/154 (94%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 123 IFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
Query: 188 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 367
RDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYEL
Sbjct: 183 RDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYEL 242
Query: 368 PDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 469
PDGQVITIGNERFR PEALFQPS LG+E GIHE
Sbjct: 243 PDGQVITIGNERFRAPEALFQPSALGLENAGIHE 276
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 177 bits (432), Expect = 5e-46
Identities = 80/154 (51%), Positives = 111/154 (72%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AG
Sbjct: 123 MFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182
Query: 188 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYEL 367
RD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y L
Sbjct: 183 RDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTL 242
Query: 368 PDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 469
PDG+VI +G+ER+ CPE LFQP +G E G+ E
Sbjct: 243 PDGRVIKVGSERYECPECLFQPHLVGSEQPGLSE 276
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 172 bits (419), Expect = 2e-44
Identities = 77/152 (50%), Positives = 107/152 (70%)
Frame = +2
Query: 11 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 190
+ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188
Query: 191 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELP 370
D+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LP
Sbjct: 189 DVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLP 248
Query: 371 DGQVITIGNERFRCPEALFQPSFLGMEACGIH 466
D Q IT+G E F PE LF P +G EA G+H
Sbjct: 249 DNQTITLGTECFSAPEVLFNPEMMGSEASGLH 280
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.1 bits (221), Expect = 2e-20
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHA 163
+FE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +
Sbjct: 146 MFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSS 205
Query: 164 ILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA--TA 331
I + LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 206 IKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDR 260
Query: 332 ASSSSLEKSYELPDGQ--VITIGNERFRCPEALFQP 433
L+ + E G I +G ERF PE F P
Sbjct: 261 EPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.8 bits (183), Expect = 8e-16
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 20/146 (13%)
Frame = +2
Query: 92 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 271
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 272 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 391
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 392 GNERFRCPEALFQPSFLGMEACGIHE 469
NERF PE LF PS + + GI E
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPE 302
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.4 bits (125), Expect = 8e-09
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 181
+FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+
Sbjct: 138 LFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISW 197
Query: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 355
G + YL+K+ + SF + C+V+ D+ ++A A LE+
Sbjct: 198 GGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
Score = 29.1 bits (62), Expect = 0.35
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 398 ERFRCPEALFQPSFLGMEACGIHE 469
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +2
Query: 11 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 190
FE P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
Query: 191 DLTDYLMKILTERGYSFTTTAEREIVRDIKE 283
+T +L +L E + ++ + DI E
Sbjct: 230 YMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.4 bits (100), Expect = 9e-06
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 8 VFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 187
+FE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 188 RDLTDYLMKILTERGY 235
+ D L + L ++ +
Sbjct: 181 NAINDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.7 bits (96), Expect = 3e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +2
Query: 236 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 415
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 416 EALFQPSF 439
E LF PSF
Sbjct: 300 EILFNPSF 307
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.066
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 50 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 229
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 230 GYSF 241
+ +
Sbjct: 340 HFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +3
Query: 18 PSTHPPCT*LSRPCSHC-TRPV--VPPVSCWIPAMVYPTQYPSTRVTPYRTPS 167
P HPP LS+P S P+ VPPV + + P PS P PS
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVP-KLSSKAPPVPLPSADAPPIPVPS 1038
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 75 PVVPPVSCWIPAMVYPTQYPSTRVTPY 155
P+ WIP MVYP + T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 7.6
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 104 SGDGVSHTVPIYEGYALP 157
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 7.6
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 275 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 382
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,514
Number of Sequences: 5004
Number of extensions: 36281
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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