Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F05
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    29   0.25 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.0  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    24   7.2  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    24   7.2  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    24   7.2  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    24   9.5  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 278 SINGGNKVAAFCYNHTESDWDISEFMLRVINHFHFTTHVHPS 153
           ++  G +V + CY   E+DW +S+ + R +     +   HP+
Sbjct: 116 AVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +2

Query: 89   IILQYLTIYYVILVAFYVI 145
            I+L+Y T+Y+ + +AF+V+
Sbjct: 1673 IVLRYATLYFSLFIAFFVL 1691


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 226 VIGTFQNSCSGSSII 182
           ++GT+ N+CSG+ I+
Sbjct: 226 ILGTYPNTCSGNIIV 240


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 191 INHFHFTTHVHPS*TISRKMPPKL 120
           INHF   TH+  S  IS K  P L
Sbjct: 86  INHFKSMTHLLSSQHISNKFQPHL 109


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = -2

Query: 260 KVAAFCYNHTESDWDISEFMLRVINHFHFTTHVH 159
           ++  +C    +    +  ++ R+++HFHFT  ++
Sbjct: 88  RILKYCPATNDVFLSVLIYLDRIVHHFHFTVFIN 121


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 24  FDICSFVSAILVCHVVILIFNSLS 95
           F + SF+ A +  HV  ++FN++S
Sbjct: 454 FTLPSFIGATVFAHVSQIMFNNMS 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,886
Number of Sequences: 5004
Number of extensions: 29380
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)