Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F05
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    27   5.3  

>02_04_0371 +
           22434710-22435102,22435428-22435624,22435707-22435824,
           22436458-22436574,22436702-22436803,22437431-22437487,
           22437976-22438044,22438423-22438533,22438597-22438791,
           22439023-22439121,22439656-22440222,22440344-22440568,
           22441036-22441338,22441640-22441707,22441947-22442105,
           22442230-22442475,22442549-22442680,22443243-22443351,
           22444131-22444283,22444359-22444601,22444695-22444862,
           22445013-22445156,22445238-22445699,22446495-22446791,
           22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 235 TPRVIGTFQNSCSGSSIIFTSLHMC 161
           T + +GT+  SCS SS I    H C
Sbjct: 681 TSKRVGTYLESCSPSSYILIDAHPC 705


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,207
Number of Sequences: 37544
Number of extensions: 189470
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)