Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F05
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   8.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 55  WFVMLSS*FSIHYLAVFDYILCNFGGILRDIV*LGCTCVVK 177
           W V      S+HYL    YIL  F  +L + + +   C  K
Sbjct: 37  WLVYPEPNPSLHYLLALLYILFTFLALLGNGLVIWIFCAAK 77


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 77  QDDNMTNQNRANKRTN 30
           Q+DN  NQN  N+  N
Sbjct: 520 QNDNQNNQNDNNRNDN 535


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 83  ENQDDNMTNQNRANKRTNVKID 18
           +NQD+N  N N    R + K D
Sbjct: 418 DNQDNNHYNHNHNQARHSSKSD 439


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 68  CHPDFQFIILQYL 106
           CHPD Q  ++Q L
Sbjct: 366 CHPDIQEKVIQEL 378


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -2

Query: 80  NQDDNM---TNQNRANKRTNVK 24
           NQ+DN+    NQN  N++ N K
Sbjct: 418 NQNDNIQNTNNQNDNNQKNNKK 439


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 250 RSVTTTPRVIGTFQNSCSGSS 188
           R  +  P++I +  NSC+ S+
Sbjct: 295 RERSKEPKIISSLSNSCNYSN 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,852
Number of Sequences: 438
Number of extensions: 2332
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)