Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F04
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    31   0.073
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    26   2.7  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   3.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   8.4  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 31.5 bits (68), Expect = 0.073
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 447 VSYEILPFIF*SVLFVILYIRFSCFGHTGFIMA 349
           + + ++P I   VL +I YI + CFG T +I++
Sbjct: 17  IEHSVIPIIALLVLSLIFYILYICFGTTSYILS 49


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 365 VCPKHENRIYSMTKRTD*NIKGKISYETSSCPTR 466
           + P H N++    K +  +  G ISYE   CP R
Sbjct: 199 ISPDHANQLKLSGKISKIHPNGLISYEGEDCPQR 232


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = -3

Query: 337 GADVFKTLRDKIPKHSF*VI*YFLKYSVPCC*TIKFSSIYTHIHRQRDLPHTANNNNGRN 158
           G+++   ++ ++P +    I       +P C  I FS++   +    D+    NN+ G N
Sbjct: 13  GSEIVNDVKKRLPYYKSDWIDACHYRVLPACLNIYFSNLLPELAFALDMFAKTNNSFGVN 72

Query: 157 SSPILNYFTSVYFVIL 110
              + +   SV F +L
Sbjct: 73  EVLLASVLGSVVFALL 88


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 309 SRSVLNTSAPVKTTP-**SRCVQSTKIEY 392
           S SVL TS PV +TP   + C  ST + Y
Sbjct: 535 STSVLYTSTPVTSTPLATTNCTTSTSVPY 563


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 162 RPLLLLAVWGRSLCLCICV*IEENFIVQQHGTEY 263
           R LLLL VWG    L +C  +  +F+ +     Y
Sbjct: 401 RILLLLTVWGMIAALIVCA-VAFHFLPKDENGNY 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,222
Number of Sequences: 5004
Number of extensions: 39319
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)