Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F04
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350...    28   4.8  
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195           27   6.3  
08_02_0059 - 11778739-11780998,11781744-11781751                       27   6.3  

>01_05_0404 -
           21833736-21834035,21834506-21834662,21834834-21835080,
           21835424-21835637,21836565-21836728,21836843-21836950,
           21841596-21841797,21843676-21844194
          Length = 636

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 443 RMKSCLLYFNQFFLSYYIFDFRALDTPASSWRRFN 339
           R +   +Y++Q+ L +   DFRA  T A +W  +N
Sbjct: 123 RFRDATIYYDQYMLRFSGEDFRANLTNAPAWVAWN 157


>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
          Length = 767

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 491 EILHSSLRCAWDTMTFRMKSCLLYFNQFFLSY 396
           E+++  L  +++ +   MKSCLL+   F L Y
Sbjct: 413 EVMNKILFMSYNDLPHHMKSCLLHLGLFHLRY 444


>08_02_0059 - 11778739-11780998,11781744-11781751
          Length = 755

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 485 LHSSLRCAWDTMTFRMKSCLLYFNQFFLSYYIF 387
           L+  L  ++D +   +K C LYF  F +SY ++
Sbjct: 242 LNRILSLSFDDLHHELKLCFLYFTAFPVSYKVY 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,507
Number of Sequences: 37544
Number of extensions: 208650
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)