Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F03
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   2.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   6.7  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   6.7  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 343 IELRR*MQLTIKKKKQYNHIYDFSCYAFFIQQF 245
           +EL     L +KK   Y H+ +  CY F I  +
Sbjct: 535 LELENVSSLDVKKLDMYMHLCELFCYFFRIHDY 567


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 164 HVSLIYKYSVLQLILDYWKFLFFEVYLKLLNKKSIT 271
           + S +Y YS  Q+I  +W+  + EV +  L +++ T
Sbjct: 419 NTSHLYNYSTKQMISKFWETYYEEVKVVNLPEENTT 454


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = -2

Query: 490 LMANYHRKYHFLVTLYLKHIIFI 422
           +++  HR+YH  V ++++ ++F+
Sbjct: 382 VISTTHREYHLAVFIFIQFLVFV 404


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 155 WFYHVSLIYKYSVLQLILDYWKFLFFEVYLKLLNKKSITTKVIYVVILFFFFNCQLH 325
           WF H S+  K+S++ L+      L F   L L++       V Y  +L    N  L+
Sbjct: 51  WFKHQSVFLKFSLIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLLPILNALLN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,965
Number of Sequences: 5004
Number of extensions: 42945
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)