Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F03
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.11 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 478 YHRKYHFLVTLYLKHIIF--IETYKHEITYS 392
           +H + H  VT Y + + F    TY HEITYS
Sbjct: 175 FHLETHPNVTWYSQCVTFNAFPTYTHEITYS 205


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 324 CN*QLKKKNSITTYMTL 274
           CN + + KNS+TT+ +L
Sbjct: 41  CNRRYRTKNSLTTHKSL 57


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 260 FYSTVLDKPQRKEISNNLILVEAQS 186
           +Y T++D P  ++   N+I   +Q+
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQA 109


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 260 FYSTVLDKPQRKEISNNLILVEAQS 186
           +Y T++D P  ++   N+I   +Q+
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQA 36


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 260 FYSTVLDKPQRKEISNNLILVEAQS 186
           +Y T++D P  ++   N+I   +Q+
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQA 52


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 260 FYSTVLDKPQRKEISNNLILVEAQS 186
           +Y T++D P  ++   N+I   +Q+
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQA 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,166
Number of Sequences: 438
Number of extensions: 2850
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)