Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F02
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   6.1  

>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 234 YFALRFLTIYRLTKCLRNPIWNILTMTTTIIMGVKMIVIWKQSIVVN 374
           YF+  +LT YR ++ L+N +        T ++ +  +  W++ +V+N
Sbjct: 123 YFSKEYLTAYRRSELLQNKLHEYQKKLITRVLDMYQL-HWQRDLVLN 168


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 359 LFPYHNHLDPHNNRSRHCQNIP 294
           L P  NH+D H+N   HC  +P
Sbjct: 493 LQPGINHVDCHDNIGLHCGLLP 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,989
Number of Sequences: 5004
Number of extensions: 19887
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)