Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F02
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    27   4.4  
03_05_1154 + 30803983-30806047,30806152-30806968,30807362-308076...    27   7.7  

>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 188 LQKGYSDFKGILYIHYCHV 132
           +Q G++ ++G+LY++ CHV
Sbjct: 752 IQHGHAYWRGVLYVNTCHV 770


>03_05_1154 +
           30803983-30806047,30806152-30806968,30807362-30807655,
           30808214-30808451
          Length = 1137

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 410 LLDRNIRNTQDLIYYDRLFPYHNHLDPHNNRSRHCQ 303
           L D  +R   +L  YDR+  Y  H D H      C+
Sbjct: 221 LCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECK 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,449,718
Number of Sequences: 37544
Number of extensions: 100711
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)