Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F02
         (412 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D83032-1|BAA11748.1| 1978|Homo sapiens nuclear protein, NP220 pr...    29   7.9  
BX537425-1|CAD97667.1| 1978|Homo sapiens hypothetical protein pr...    29   7.9  
BC083513-1|AAH83513.1| 1957|Homo sapiens ZNF638 protein protein.       29   7.9  
BC024000-1|AAH24000.1|  814|Homo sapiens ZNF638 protein protein.       29   7.9  
AF534078-1|AAM97681.1| 1139|Homo sapiens putative NP220 nuclear ...    29   7.9  
AC007878-1|AAF66079.1|  792|Homo sapiens unknown protein.              29   7.9  

>D83032-1|BAA11748.1| 1978|Homo sapiens nuclear protein, NP220
           protein.
          Length = 1978

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


>BX537425-1|CAD97667.1| 1978|Homo sapiens hypothetical protein
           protein.
          Length = 1978

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


>BC083513-1|AAH83513.1| 1957|Homo sapiens ZNF638 protein protein.
          Length = 1957

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


>BC024000-1|AAH24000.1|  814|Homo sapiens ZNF638 protein protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


>AF534078-1|AAM97681.1| 1139|Homo sapiens putative NP220 nuclear
           protein isoform protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


>AC007878-1|AAF66079.1|  792|Homo sapiens unknown protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 347 HNHLDPHNNRSRHCQNIPYRIPQTFC*SVNC*KS*SKIKMTESTERTFGKKRTLQ 183
           H  +  + +RSR     PYRI   F  S  C +S S  +M+  + R+  +K+ L+
Sbjct: 527 HRFISRYRSRSR--SRSPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALE 579


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,863,311
Number of Sequences: 237096
Number of extensions: 614437
Number of successful extensions: 1432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)