Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F01
         (245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   2.4  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    24   3.2  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    23   4.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    23   5.6  
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    23   5.6  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    23   7.4  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    22   9.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    22   9.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    22   9.8  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    22   9.8  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 116  VFSTFIVPFQVDPKIKVCSDLAVVKIRNIND 24
            VFST I    +D +++ C+D   + I+ ++D
Sbjct: 974  VFSTLITVDNLDAQVQSCADSTELLIKVLSD 1004


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 52  AKSLHTLILGSTWKGTMNVEKTFH 123
           AKS+H L + ++ K  +NVE+ F+
Sbjct: 140 AKSMHCLYVETSAKLRLNVEEAFY 163


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 491

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 46 TTAKSLHTLILGSTWKG 96
          TTA S   + LG TW+G
Sbjct: 44 TTAPSTGRMYLGGTWRG 60


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 92  FQVDPKIKVCSDLAVVKIRNINDASH 15
           FQ++ K+   S  A + I+ +NDA +
Sbjct: 270 FQLEEKLHEASHEAEISIKKLNDAEN 295


>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 116 VFSTFIVPFQVDPKIKVCSDLAVV 45
           ++ T ++P  VDPKI +  +  V+
Sbjct: 26  IYLTVLIPDAVDPKINLTPEKLVI 49


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 131 SSINHVMFLSNFLTTSPLHL 190
           S I H+++  +F   SPLHL
Sbjct: 295 SIIEHLIYQKDFHLISPLHL 314


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 169 NHLAPPLSG 195
           NHL PPLSG
Sbjct: 8   NHLLPPLSG 16


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 142 INRRLSNEMSFQHSSF 95
           +NR+  NE+S  H SF
Sbjct: 153 VNRKEHNELSLSHLSF 168


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 161 NFLTTSPLHLVVRSEILEPRFSKL 232
           N L TSPL    +SE+ +P    L
Sbjct: 137 NSLATSPLSTETQSEVSDPLLDTL 160


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 81  VYLERNDEC*KDISFESRL 137
           +Y   +D C KD+S ES+L
Sbjct: 364 LYYYASDSCPKDLSSESQL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,759
Number of Sequences: 5004
Number of extensions: 13986
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)