Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_F01
         (245 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756...    27   2.8  
03_06_0141 - 31955782-31956801                                         25   6.4  

>09_04_0097 -
           14573499-14574110,14574977-14575017,14575424-14575616,
           14575697-14575837,14575970-14576197,14576297-14576552,
           14576866-14577069,14577157-14577245,14577346-14577416,
           14577498-14577579,14577653-14577715,14578018-14578155
          Length = 705

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  ICDASFIFRILTTAKSLHTLILGSTWKGTMNVEKTF 120
           ICDA  + +IL  +  +  L +   WK T + E+ F
Sbjct: 119 ICDAVAVAKILNASLVIPHLEVNPVWKDTSSFEEIF 154


>03_06_0141 - 31955782-31956801
          Length = 339

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 16  CDASFIFRILTTAKSLHTLILGSTWK 93
           CDA+ +  +  T K+L  +ILG  ++
Sbjct: 59  CDAATVLSLAATCKALRRIILGDDFR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,736,820
Number of Sequences: 37544
Number of extensions: 83038
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)