Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_F01
(245 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical pr... 28 1.0
AF067948-5|AAC17698.2| 243|Caenorhabditis elegans Hypothetical ... 27 1.3
AF016444-13|AAB65926.1| 330|Caenorhabditis elegans Serpentine r... 26 3.1
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 26 4.1
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 26 4.1
U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine rec... 25 9.4
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 25 9.4
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 25 9.4
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 25 9.4
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 25 9.4
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 25 9.4
>Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical
protein T24C2.4 protein.
Length = 328
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 119 NVFSTFIVPFQVDPKIKV 66
NVF TF+V F VD IK+
Sbjct: 237 NVFQTFVVDFSVDDAIKI 254
>AF067948-5|AAC17698.2| 243|Caenorhabditis elegans Hypothetical
protein T27C4.1 protein.
Length = 243
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 10 LICDASFIFRILTTAKSLHTLILGSTWKGTMNVEKTFHLRVVY 138
L+C I +L T+ +G TW+ N+E++ V+Y
Sbjct: 81 LVCRICTIIGLLFLIAGAVTICIGYTWREERNIEQSIERFVLY 123
>AF016444-13|AAB65926.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 8 protein.
Length = 330
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 25 SFIFRILTTAKSLHTLILGSTWKGTMNVEKTFHLRVV 135
+ IF++L + +L +++ S W K FH+ V+
Sbjct: 23 TLIFQLLCSLIALPVVVIASHWLSKSRNAKLFHINVI 59
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 113 FSTFIVPFQVDPKIKVCSDLAVVKIRNIND 24
F ++VP++V+PK++V L RN++D
Sbjct: 528 FQLYLVPYKVEPKLRV--RLMADLFRNLDD 555
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 113 FSTFIVPFQVDPKIKVCSDLAVVKIRNIND 24
F ++VP++V+PK++V L RN++D
Sbjct: 528 FQLYLVPYKVEPKLRV--RLMADLFRNLDD 555
>U80029-18|AAB37597.2| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 20 protein.
Length = 330
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 10 LICDASFIFRILTTAKSLHTLILGSTWKGTMNVEKTFHLRVV 135
L + IF+ L + +L +++ S W K FH+ V+
Sbjct: 18 LFIQMTLIFQFLCSLIALPVVVVASYWLWKSRNGKLFHINVI 59
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 73 ILGSTWKGTMNVEK 114
ILGS WKG N EK
Sbjct: 211 ILGSRWKGMSNSEK 224
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 73 ILGSTWKGTMNVEK 114
ILGS WKG N EK
Sbjct: 208 ILGSRWKGMSNSEK 221
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 73 ILGSTWKGTMNVEK 114
ILGS WKG N EK
Sbjct: 314 ILGSRWKGMSNSEK 327
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 73 ILGSTWKGTMNVEK 114
ILGS WKG N EK
Sbjct: 362 ILGSRWKGMSNSEK 375
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 73 ILGSTWKGTMNVEK 114
ILGS WKG N EK
Sbjct: 362 ILGSRWKGMSNSEK 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,981,333
Number of Sequences: 27780
Number of extensions: 76009
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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