Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E24
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   1.4  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   3.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   7.4  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -1

Query: 373  QHTHTHNTRTRDEHDIFFILLHFYIYMSLKYCCTFV---YICRSRLFGRCPSFMKPPGR 206
            QH++  N  + D H +F I     +   L+YC  F     +   R F     F +PP R
Sbjct: 1508 QHSYETNGHSSDTHSLFVINSQRVVGDILQYCSQFANDRNLPALRYFMDSTKFPQPPER 1566


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = -3

Query: 386 VGVISAHSHTQHTDTGXXXXXXXXXXXXXXYVFKVLLYFCLHLPE 252
           +GV+ A+  T  TD                  +K +LYF   +PE
Sbjct: 401 LGVVIANLATGRTDMDMSSAARAIYSTYSREFYKAVLYFVSEVPE 445


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 287 KVLLYFCLHLPEPLVRP 237
           ++ LYF  HL EPLV P
Sbjct: 30  RIALYFHNHLDEPLVDP 46


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 168 VNSYNIPPQPFLARPGGFMNDGQRPN 245
           +NS+N  P PF + P  F N    PN
Sbjct: 211 INSFN--PTPFSSSPLHFTNSSPNPN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 945,559
Number of Sequences: 5004
Number of extensions: 13159
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)