Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E24
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49954-6|AAA93428.1|  123|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu...    27   6.4  
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu...    27   6.4  
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu...    27   6.4  
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu...    27   6.4  
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO...    27   6.4  
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR...    27   6.4  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U49954-6|AAA93428.1|  123|Caenorhabditis elegans Hypothetical
           protein Y102E9.3 protein.
          Length = 123

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 285 SIVVLLFTFAGAA--CSAVVRHS*NRPGEPRTVAVGY 181
           SI +LL TFAGAA  C+ V +HS  +   P TV + +
Sbjct: 6   SISLLLVTFAGAAEMCAPVTQHSTPQSDVPSTVTITF 42


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 316 LLHFYIYMSLKYCCTFVYIC 257
           L+ F  ++  K CC FVY+C
Sbjct: 312 LILFLFHLPTKNCCRFVYVC 331


>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform a protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1019 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1056


>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform d protein.
          Length = 1147

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1019 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1056


>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform b protein.
          Length = 1328

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1203 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1240


>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform c protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1203 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1240


>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
            protein.
          Length = 1147

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1019 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1056


>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
            protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 361  THNTRTRDEHDIFFILLHFYIYMSLKYCCTFVYICRSR 248
            T  T +R+ +    ILL   + + L  CC    +CR R
Sbjct: 1203 TTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQR 1240


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 328 IFFILLHFYIYMSLKYCCTFVYI 260
           IF I++ F+    L+YCCTF ++
Sbjct: 189 IFIIIVSFF---HLRYCCTFFFL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,529,552
Number of Sequences: 27780
Number of extensions: 84982
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)