Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E23
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 212 2e-56
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 212 3e-56
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.55
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 1.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.2
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 2.9
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 2.9
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.1
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 5.1
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 5.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.0
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 9.0
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 212 bits (518), Expect = 2e-56
Identities = 93/153 (60%), Positives = 123/153 (80%)
Frame = +1
Query: 25 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 204
M + E FE G++GAS TFPMQCSALRKNG V++K RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 205 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 384
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 385 DLGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 483
+LG ++ FD G++L+ TV+ + GEE +A +
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMGEETALACR 152
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 212 bits (517), Expect = 3e-56
Identities = 93/153 (60%), Positives = 123/153 (80%)
Frame = +1
Query: 25 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHL 204
M + E FE G++GAS TFPMQCSALRKNG V++K RPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 205 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 384
V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G
Sbjct: 61 VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119
Query: 385 DLGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 483
+LG ++ F+ GK+L+ TV+ + GEE +A +
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMGEEIALACR 152
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S V + TP + S +L SS +P+++ V
Sbjct: 1420 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSSVLNSS--TPITSSTV 1469
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S +L SS +P+++ V
Sbjct: 2500 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS--TPITSSTV 2549
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = -1
Query: 491 VFALTAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
+ +LTA+ S+P S+V ++S P++ S V + TP + S ++ SS
Sbjct: 2568 ITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSS 2613
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + S TP + S +L SS
Sbjct: 2800 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2841
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
TA+ S+P S+V ++S P++ S + + TP + S +L SS
Sbjct: 376 TAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSS 417
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + + TP + S +L SS +P+++ V
Sbjct: 1048 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS--TPITSSTV 1097
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + + TP + S +L SS +P+++ V
Sbjct: 1504 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS--TPITSSSV 1553
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 1732 TVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1773
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + + TP + S +L SS +P+++ V
Sbjct: 2284 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS--TPITSSTV 2333
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + + TP + S +L SS +P+++ V
Sbjct: 2692 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS--TPITSSTV 2741
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 484 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 525
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 892 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 933
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 1192 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS 1233
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 1828 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1869
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 2020 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2061
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 2596 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2637
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 2920 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2961
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S + + TP + S +L SS
Sbjct: 3280 TVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSS 3321
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
TA+ S+P STV ++S P++ S + S T + S IL SS +P+++ V
Sbjct: 3424 TALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSS--TPITSSSV 3473
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV + S P++ S V + TP + S ++ SS +P+++ V
Sbjct: 1348 TVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSS--TPITSSTV 1397
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV + S P++ S V + TP + S ++ SS +P+++ V
Sbjct: 2188 TVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSS--TPITSSTV 2237
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + + TP + S +L SS +P+++ V
Sbjct: 3016 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSS--TPITSSSV 3065
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV + S P++ S V S TP + S L +S +P+++ V
Sbjct: 1660 TVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTS--TPITSSSV 1709
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S V S TP + S L +S +P+++ V
Sbjct: 1720 TVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTS--TPITSSSV 1769
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSS 360
T + S+P STV ++S P++ S V + TP + S ++ SS
Sbjct: 2260 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSS 2301
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
TA+ S+P STV ++S P++ S + S TP + S L +S +P+++ V
Sbjct: 3040 TALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTS--TPITSSSV 3089
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S ++ +S +P+++ V
Sbjct: 1384 TVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTV 1433
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S ++ +S +P+++ V
Sbjct: 2224 TVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTV 2273
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S ++ +S +P+++ V
Sbjct: 2512 TVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTV 2561
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S V + TP + S ++ +S +P+++ V
Sbjct: 1156 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTS--TPITSSTV 1205
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S V + TP + S ++ +S +P+++ V
Sbjct: 1468 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTS--TPITSSTV 1517
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S L +S +P+++ V
Sbjct: 2812 TVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTS--TPITSSSV 2861
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLPLSKS--VRSCTPRSPSGILRSSRRSPLSAMRV 330
T + S+P STV ++S P++ S + S TP + S L +S +P+++ V
Sbjct: 832 TVVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTS--TPITSSSV 881
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 85 PMQCSALRKNGFVMLKSRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 237
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 262 NMDVPHVKREDYQLTDISDDGYL 330
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 178 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 297
K A L+ D F+G ++ IC S N+ + V ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 169 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 294
K G+H A +++ + N K +D CPST D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 410 SVRSCTPRSPSGILRSSRRSPLSAMR 333
S R C+P +PS ++ +++ S +SA R
Sbjct: 330 STRLCSPENPSLLVNTAKTSKMSARR 355
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 160 TSRQSCRGDSSTLRNRSYAGRSTAWEML 77
T+ ++C+GD +T R G WEM+
Sbjct: 320 TNCRNCKGDINTFRPTIMVGVPAVWEMV 347
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 46 VYLQCHPLCCVYCLV 2
++L C+PL CV C V
Sbjct: 26 IFLVCYPLYCVVCFV 40
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 479 TAITHSSPQDFSTVHSNSLP 420
+A+ S P DF +VHS++LP
Sbjct: 214 SALPISPPSDFFSVHSHNLP 233
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 280 VKREDYQLTDISDDGYL 330
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 397 QLRTDFDSGKELLCTVLKSCG 459
QL+ F E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 109 YAGRSTAWEMLPRHRSLRSRNVYLQ 35
+A WE P+H +RS N Y++
Sbjct: 94 FADLRELWEYEPKHDKIRSWNTYVR 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,428
Number of Sequences: 5004
Number of extensions: 45184
Number of successful extensions: 213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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