Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E23
(518 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 196 1e-50
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 186 6e-48
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.37
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 31 0.65
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 31 0.65
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 30 0.86
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.6
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 28 3.5
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 28 3.5
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 27 6.1
U40030-2|AAR12978.2| 292|Caenorhabditis elegans Hypothetical pr... 27 6.1
AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 196 bits (477), Expect = 1e-50
Identities = 94/154 (61%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +1
Query: 37 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 216
+D HF TGDSGA+ATFP QCSALRKN VM+K RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 217 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 393
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125
Query: 394 VQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 492
Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 186 bits (454), Expect = 6e-48
Identities = 88/154 (57%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +1
Query: 37 EDTHFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHLVGID 216
++ F++ +SGA+ATFP QCSALRKN VM++ RPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 217 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 393
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159
Query: 394 VQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 492
+R + + +L V+ +CGEE ++ K +T
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 262 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELL 435
N +P +K++ Y L ++ GY+ + GDL+ KI D + ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKAMLRPDGYERGRLRH 630
Query: 436 CTVLKSCGEEC 468
++K CG++C
Sbjct: 631 AALVKECGDKC 641
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 293 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 439
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 293 TTN*PISLTTATSPSWLTTVTCVKTSRYRTAISAYNCVPTLTAARSYCA 439
TT PI++ T SP+ TT T+R T + PT T + S CA
Sbjct: 485 TTTAPITVPTV-SPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTSQCA 532
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 452 DFSTVHSNSLPLSKSVRSCTPRSPSGILRSSRRSPLSA 339
D +T HS+S K + T +SPS I SRRS SA
Sbjct: 314 DLTTKHSSSNSPHKLAEASTSKSPSPISECSRRSSSSA 351
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +1
Query: 217 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 372
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a) protein
1, isoform b protein.
Length = 1069
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 211 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI--PDG 384
+D+ NG + T+N+ +P + QL ++S D Y +++ ++ + P+
Sbjct: 755 VDLLNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCD-YSSMLGGRVQAGYNMTVTGPEA 813
Query: 385 DLGVQLRTDFDSGKELLCTVLKSCGEE 465
+L +Q R + G +L +L G E
Sbjct: 814 NL-IQPRGKIELGNPVLMQLLNGDGTE 839
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a) protein
1, isoform a protein.
Length = 1065
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 211 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI--PDG 384
+D+ NG + T+N+ +P + QL ++S D Y +++ ++ + P+
Sbjct: 751 VDLLNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCD-YSSMLGGRVQAGYNMTVTGPEA 809
Query: 385 DLGVQLRTDFDSGKELLCTVLKSCGEE 465
+L +Q R + G +L +L G E
Sbjct: 810 NL-IQPRGKIELGNPVLMQLLNGDGTE 835
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 143 QGRLFNITKPFLRRAEHCMGNVAEAPESPVSKCVSSMSP 27
Q R+ +P +R+++C G + E E ++KC +M P
Sbjct: 337 QRRVRFCNEPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 322 GYLTLMADNGDLREDLKIPDGDLGVQLRTDFDSGKELLC 438
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40030-2|AAR12978.2| 292|Caenorhabditis elegans Hypothetical
protein T13C2.7 protein.
Length = 292
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 514 VGLFVEELCLL*LRSHTPHRKISAQCTVTPCRCQSRYAVVRRDRRPV 374
+G F + LL RS PH+ + Q T+ + R V +RR +
Sbjct: 53 IGAFASVIVLLMFRSIRPHQSLDDQVTLMMSTMKMRVEVDEYERRKI 99
>AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical
protein C46E10.8 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 46 HFETGDSGASATFPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKV 198
H ET DSGA A + A +GF + P ++ +S + + G +V
Sbjct: 86 HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,755
Number of Sequences: 27780
Number of extensions: 279528
Number of successful extensions: 924
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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