Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E23
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    26   0.20 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    26   0.20 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.6  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 113 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 18
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 113 FLRRAEHCMGNVAEAPESPVSKCVSSMSPIVL 18
           +LRR   C   + EAP  PV + + S++P+VL
Sbjct: 47  YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 169 WKWTSRQSCRGDSSTLR 119
           W W   Q+C G +S  R
Sbjct: 111 WSWAKNQNCSGITSVYR 127


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 263 LWVEGQISSYFLPLNISM 210
           LW   QISS  +P N++M
Sbjct: 46  LWTGKQISSLIIPGNVNM 63


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 214 DIFNGKKYEDIC 249
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 100 RSTAWEMLPRHRSLRSRNVYLQC 32
           RST+ E L    +++S NV+  C
Sbjct: 35  RSTSLEELANRNAIQSDNVFANC 57


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 235 YEDICPSTHNMDV 273
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 501 SKSCVCFDCD 472
           + SC C DCD
Sbjct: 323 ASSCSCLDCD 332


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 214 DIFNGKKYEDICPSTH 261
           +I NGKK  +I   TH
Sbjct: 44  EIINGKKLTEIINETH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,813
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)