Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E19
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 60 2e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 42 6e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 38 0.001
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 38 0.001
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 36 0.005
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 36 0.005
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 34 0.017
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.039
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 27 2.5
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 2.5
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 4.4
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 5.9
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 312 TIMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDT 491
T +RE+ ALT+Q + F+++YDPTIED YR + E+D +L++LDT
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDT 63
Query: 492 AGTEQ 506
AG E+
Sbjct: 64 AGQEE 68
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 41.9 bits (94), Expect = 6e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 369 ALTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQ 506
+LTVQ+V F+E Y PTIE+ + I+ EI+DTAG ++
Sbjct: 21 SLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDE 66
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 372 LTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQSPR 515
L + F G F E Y PT+ + Y ++EVD L + DTAG E R
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDR 69
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 372 LTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQSPR 515
L + F G F E Y PT+ + Y ++EVD L + DTAG E R
Sbjct: 22 LLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDR 69
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 372 LTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEIL--DTAGTEQSPR 515
L + F SG F E+Y PT+ + Y T+I + V+E+ DTAG E+ R
Sbjct: 30 LLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDR 79
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 384 FVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQ 506
F G F + Y+PTI + Y +I VD + L + DTAG E+
Sbjct: 33 FTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 33.9 bits (74), Expect = 0.017
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 372 LTVQFVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQSPR 515
L + + + F Y PT+ D Y + + + P L + DTAG E R
Sbjct: 19 LLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDR 66
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 32.7 bits (71), Expect = 0.039
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 384 FVSGCFMEKYDPTIEDFYRTEIEVDNSPCVLEILDTAGTEQSPR 515
F G F +Y PT+ + Y ++ VD L + DTAG E+ R
Sbjct: 28 FTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYER 71
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 409 FSMKHPDTNCTVKALFPTPPDPSTTTLNSRIIVSYKSHLR-NFHTTF*KRILSV 251
F++K T K +FP PP T+N + + S L ++H F +RI+++
Sbjct: 45 FAVKSFSTTSVAK-IFPPPPQTIKGTVNDAAVFPHHSKLHGSYHWDF-ERIIAI 96
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 LTVQFVSGCFMEKYDPTIE-DFYRTEIEVDNSPCVLEILDTAGTEQ 506
L ++F F + TI DF IE+D L+I DTAG E+
Sbjct: 25 LLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 369 ALTVQFVSGCFMEKYDPTIEDFYRTE-IEVDNSPCV-LEILDTAGTEQ 506
+L ++FV F + + TI + T+ + +D + V LEI DTAG E+
Sbjct: 29 SLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQER 76
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 397 HPDTNCTVKAL--FPTPPDPSTTTLNSRIIVSYKSHLRN 287
+P + KAL FP PPDP N R IV KS +N
Sbjct: 220 NPTSGLKRKALKQFPLPPDPCQALANLRPIV--KSFYKN 256
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -2
Query: 487 SNISKTHGELSTSISVL*KSSIVGSYFSMKHPDTNCTVKALFPTPPDPSTTTLNS 323
S + T+G S+S S SS + S K P + L PT P TTT+ +
Sbjct: 412 STANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQTTTIQT 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,374
Number of Sequences: 5004
Number of extensions: 47911
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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