Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E18
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 245 4e-66
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 121 6e-29
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 91 1e-19
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 69 5e-13
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 40 2e-04
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 37 0.002
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 33 0.028
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.46
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.60
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.60
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.60
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 5.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.4
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.8
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 9.8
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 245 bits (599), Expect = 4e-66
Identities = 115/134 (85%), Positives = 128/134 (95%)
Frame = +2
Query: 5 REMYQMITLGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFA 184
+EMYQ+IT+GG+AELELVDSLDPFSEG++FSV PP KSWKNISNLSGGEKTLSSLALVFA
Sbjct: 1186 KEMYQIITMGGNAELELVDSLDPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFA 1245
Query: 185 LHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRYNMFEVSNRLIGIY 364
LH YKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFI+ISLR NMFE+S+RL+GIY
Sbjct: 1246 LHNYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIVISLRSNMFELSSRLVGIY 1305
Query: 365 KTEDCTKSVTVDNK 406
KT + TKSVT++NK
Sbjct: 1306 KTANMTKSVTINNK 1319
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 121 bits (292), Expect = 6e-29
Identities = 58/124 (46%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +2
Query: 29 LGGDAELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSGGEKTLSSLALVFALHYYKPTP 208
LGG A L L D +P+ GI F PP K ++++ LSGGEKT+++LAL+FA+H Y+P+P
Sbjct: 1096 LGGTAYLTLDDLDEPYLGGIKFHAMPPMKRFRDMDQLSGGEKTMAALALLFAIHSYQPSP 1155
Query: 209 LYVMDEIDAALDFKNVSIVANYIKERTKNA-QFIIISLRYNMFEVSNRLIGIYKTEDCTK 385
+V+DEIDAALD NV+ +ANYI++ + QF++ISL+ +F S L+GIY+ +
Sbjct: 1156 FFVLDEIDAALDQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSEALVGIYRDQQENS 1215
Query: 386 SVTV 397
S T+
Sbjct: 1216 SRTL 1219
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 90.6 bits (215), Expect = 1e-19
Identities = 46/119 (38%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Frame = +2
Query: 8 EMYQMITLGGDAELELVDSLDPFSEGIIFSVRPPNKSWKN-ISNLSGGEKTLSSLALVFA 184
E++ + G AEL+ ++ + F++G+ V+ WK+ ++ LSGG+++L +LAL+ +
Sbjct: 1044 EIFDELLPGNSAELQPPENKE-FTDGLEIHVKI-GSIWKDSLAELSGGQRSLVALALIMS 1101
Query: 185 LHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRYNMFEVSNRLIGI 361
L YKP P+Y++DEIDAALD + + IK + K +QFII+SL+ MF +NRL +
Sbjct: 1102 LLKYKPAPMYILDEIDAALDLSHTQNIGRLIKTKFKGSQFIIVSLKEGMFTNANRLFHV 1160
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 68.9 bits (161), Expect = 5e-13
Identities = 32/79 (40%), Positives = 50/79 (63%)
Frame = +2
Query: 125 NISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQF 304
NI+ LSGG+K+L +L L+FA+ P P ++DE DA LD + S +A +KE +K +QF
Sbjct: 1093 NINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMSKTSQF 1152
Query: 305 IIISLRYNMFEVSNRLIGI 361
I + R M +V++ G+
Sbjct: 1153 ICTTFRPEMVKVADNFYGV 1171
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 131 SNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFII 310
+NLS G++ L + L AL PT + ++DE AA+D + +IV I+ER + +
Sbjct: 1359 ANLSSGQRQL--MCLTRAL--LTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILT 1414
Query: 311 ISLRYNMFEVSNRLI 355
I+ R N SNR++
Sbjct: 1415 IAHRINTVMDSNRIL 1429
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 113 KSWKNISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK 292
KS ++ LSGGEK+ +++ ++ ++ PL +DE D +D N + + + K
Sbjct: 1036 KSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNRLVSIKMMVDSAK 1095
Query: 293 NA---QFIIIS 316
++ QFI I+
Sbjct: 1096 DSSDKQFIFIT 1106
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 33.1 bits (72), Expect = 0.028
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 140 SGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYI 277
SGGE+++S++ + +L P ++DEI+ +D +N +V +I
Sbjct: 956 SGGERSVSTIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHI 1001
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.1 bits (62), Expect = 0.46
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 137 LSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERT--KNAQFII 310
LSGG+K +AL A+ Y PT + +MD++ +ALD + + + + + +N I+
Sbjct: 740 LSGGQK--QRIALARAV--YSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVIL 795
Query: 311 ISLRYNMF 334
++ ++F
Sbjct: 796 VTHNVHLF 803
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 173 LVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRY 325
++F K L V+DE +D K V + NY+ E+ +Q ++I Y
Sbjct: 414 ILFCRAIVKQPRLVVLDEPFQGVDTKYVHMAHNYLNEKLSPSQAMVIISHY 464
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 125 NISNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALD 244
N S+LSGG+K SLA Y +Y+ D+I +ALD
Sbjct: 703 NGSSLSGGQKQRVSLARAL----YSNAEVYIFDDIFSALD 738
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.7 bits (61), Expect = 0.60
Identities = 20/72 (27%), Positives = 42/72 (58%)
Frame = +2
Query: 131 SNLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFII 310
++LSGG++ +AL AL + T + ++DE +ALD ++V + I+ K ++
Sbjct: 569 ASLSGGQQ--QRIALARAL--LRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLV 624
Query: 311 ISLRYNMFEVSN 346
I+ ++M +++N
Sbjct: 625 IT--HDMSQINN 634
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/74 (27%), Positives = 41/74 (55%)
Frame = +2
Query: 134 NLSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIII 313
N SGG+ + LA AL + L ++DE +ALD K+ ++ I + + +II
Sbjct: 1235 NFSGGQ--IQRLAFARAL--LRNPRLLILDECTSALDSKSSLLLEKTI--QNLSCTVLII 1288
Query: 314 SLRYNMFEVSNRLI 355
+ + ++ ++++R+I
Sbjct: 1289 THQPSLMKLADRII 1302
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 74 FSEGIIFSVRPPNKSW-KNISNLSGGEKTLSSLALVFAL 187
F + I+F + P KSW K I N G+K L+ + AL
Sbjct: 690 FGKKILFII-PEAKSWQKKIENTEQGQKALAHVYHALAL 727
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/73 (21%), Positives = 38/73 (52%)
Frame = +2
Query: 137 LSGGEKTLSSLALVFALHYYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIIS 316
+SGG+K +A+ A+ + ++DE +ALD K+ +V + +++ I+I+
Sbjct: 568 MSGGQK--QRIAIARAV--ISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIA 623
Query: 317 LRYNMFEVSNRLI 355
R + ++ ++
Sbjct: 624 HRLSTIRNADNIV 636
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +2
Query: 218 MDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRYNMFEVSNRLIGIYKTEDCTKSVT 394
+ ++ A +F++ + ++ Y K +T++ Q I L + ++ +L KT++ T SVT
Sbjct: 1663 LKKVVAETEFRSKAKISVYEK-KTRDLQNKITQLEETIENLNKQLSNPEKTDESTSSVT 1720
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 315 HYVTTCLKYRTGSLAFIR 368
HY+TTCL TG F++
Sbjct: 198 HYLTTCLCRETGVQGFLK 215
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 44 ELELVDSLDPFSEGIIFSVRPPNKSWKNISNLSG 145
EL + D DP + IF++ P WK L G
Sbjct: 804 ELIVADGADPVASWKIFAMMVPKSFWKQNHLLFG 837
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,960
Number of Sequences: 5004
Number of extensions: 50672
Number of successful extensions: 141
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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